AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 20, 2015 09:29AM
Hi Daniel,

No problem at all. By inline inverse warp, do you mean 3dNwarpApply with -nwarp as shown in the help ??

-iwarp = After the warp specified in '-nwarp' is computed,
invert it. If the input warp would take a dataset
from space A to B, then the inverted warp will do
the reverse.
++ The combination "-iwarp -nwarp 'A B C'" is equivalent
to "-nwarp 'INV(C) INV(B) INV(A)'" -- that is, inverting
each warp/matrix in the list *and* reversing their order.
++ The '-iwarp' option is provided for convenience, and
may prove to be very slow for time-dependent '-nwarp' inputs.

In that sense, I guess my correspondence between letters and warps would be

A (-warp1): T1Div_brain_uni_AQ_WARP+tlrc
B (-warp2): T1Div_brain_uni_A.aff12.1D
C (-warp3): mat_PrestofRegDTRCRRVTcor_2T1uni.aff12.1D

Is that right?

Thanks very much,
Cesar
Subject Author Posted

inverse transformation of ROIs from MNI to orig space is trimmed in superior slices

Cesar Caballero Gaudes May 20, 2015 06:10AM

Re: inverse transformation of ROIs from MNI to orig space is trimmed in superior slices

Daniel Glen May 20, 2015 09:17AM

Re: inverse transformation of ROIs from MNI to orig space is trimmed in superior slices

Cesar Caballero Gaudes May 20, 2015 09:29AM

Re: inverse transformation of ROIs from MNI to orig space is trimmed in superior slices

Daniel Glen May 20, 2015 01:15PM