AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 08, 2015 03:46PM
I want to make sure that I understand the bandpass + censoring, as described in afni_proc.py:

1) Bandpass regressors (sin-wave functions of increasing order) are included in a GLM, along with all other regressors.

2) Censored time-points are removed from the voxel time-series and all other regressors.

3) GLM is calculated on remaining time-points.

This approach is to avoid FFT bandpassing first, then censoring, as data within the censored time-points would be smoothed into other data. Or sensoring first and then FFT bandpassing, as the temporal structure of the data would be different.

Does the bandpass + censoring approach (1,2,3 above) decribe the -regress_censor_motion option correctly?

Would the bandpass + censoring approach yield significantly different results from adding individual predictors for each censored time-point to the GLM?

If the results are the same, why is data-removal prefered?

Thanks very much,

Andrew



Edited 1 time(s). Last edit at 07/08/2015 03:48PM by mattare2.
Subject Author Posted

afni_proc.py Censoring

mattare2 July 08, 2015 03:46PM

Re: afni_proc.py Censoring

rick reynolds July 08, 2015 04:18PM

Re: afni_proc.py Censoring

mattare2 July 08, 2015 05:32PM

Re: afni_proc.py Censoring

rick reynolds July 08, 2015 09:11PM

Re: afni_proc.py Censoring

janina_aletheia November 25, 2015 08:42AM

Re: afni_proc.py Censoring

rick reynolds December 01, 2015 12:01PM

Re: afni_proc.py Censoring

janina_aletheia December 02, 2015 03:55AM