Dear AFNI enthusiasts and experts,
I'm new to AFNI and am currently trying to run a preprocess on it with resting state data. I have the .BRIK, .HEAD, and raw .nii files and need to do the following:
1) Slice-time correct and realign echoplanar image data using a 6 parameter affine regestration
2) Regress out mean nuisance signal from estimated head motion, ventricles and white matter
Also, does anybody know of a URL that has a list of AFNI commands? All help would be appreciated.
Cheers,
Noah Markowitz