I got it, I just needed to enter the FULL pathway. Thanks. Are these warnings something to be concerned of?

*+ WARNING: dataset is already aligned in time!
*+ WARNING: ==>> output dataset is just a copy of input dataset

*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./__tt_SMART001bT1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.

Warning 3dSkullStrip:****************
Surface self intersecting!

*+ WARNING: Changing the space of an ORIG view dataset may cause confusion!
*+ WARNING: NIFTI copies will be interpreted as TLRC view (not TLRC space).
*+ WARNING: Consider changing the view of the dataset to TLRC view also

*+ WARNING: input 'a' is not used in the expression

** FATAL ERROR: 3dDeconvolve dies: Insufficient data (2) for estimating 142 parameters



Edited 1 time(s). Last edit at 07/22/2015 08:54AM by noahmarkowitz.