AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 29, 2015 01:02PM
Hi Nick,

Yes now it opened. However, I am assuming that I made the ROI with the wrong file now. I identified the ROIs with opening suma with this command:

suma -spec 118_both.spec -sv 118_SurfVol+orig

However, I made the ROI with
ROIgrow -overwrite -spec std.141.118_lh.spec -surf_A std.141.lh.smoothwm.asc -roi_nodes nodevalue_all_ROIs_lh.1D -lim 6 -full_list -roi_labels nodelabel_all_ROIs_lh.1D -prefix ROImask_118_lh

So now the ROI is in the wrong spot. Originally I did try to us the spec surface of 118_both.spec with ROIgrow, but was not able to get the ROIgrow command to work. I am assuming I have to recreate the ROI 1D files with ROIgrow with a different surface input? Can you assist with how this command should be written? I know there is information in the help file, but I have not been able to get it to work. I apologize if these questions are really annoying, as I said, I am new to using suma.
Subject Author Posted

suma- surface roi

Stephanie July 27, 2015 02:15PM

Re: suma- surface roi

Stephanie July 28, 2015 06:39PM

Re: suma- surface roi

nick July 29, 2015 07:14AM

Re: suma- surface roi

Stephanie July 29, 2015 09:30AM

Re: suma- surface roi

nick July 29, 2015 11:07AM

Re: suma- surface roi

Stephanie July 29, 2015 01:02PM

Re: suma- surface roi

nick July 30, 2015 06:31AM

Re: suma- surface roi

Stephanie July 30, 2015 02:25PM

Re: suma- surface roi

nick July 31, 2015 05:29AM

Re: suma- surface roi

Stephanie August 01, 2015 07:05PM

Re: suma- surface roi

nick August 03, 2015 07:47AM

Re: suma- surface roi

rick reynolds August 05, 2015 03:08PM

Re: suma- surface roi

Stephanie August 06, 2015 10:29AM

Re: suma- surface roi

rick reynolds August 06, 2015 12:31PM