AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 28, 2015 12:07PM
How about after:

$ sudo apt-get install libxp-dev

?

I note that on Ubuntu machines where I run AFNI, I have usually run through the list of installations listed in the "other_builds/" directory of the afni source files:
"~/afni_src/other_builds/OS_notes.linux_ubuntu_12_64"
I'm attaching its text content here (below); the file itself can be made executable to go through all the aptitude installs more easily, just hitting 'Enter' (or 'y') to any queries.

--pt

ps: though I notice it's file name has changed over time a bit... will adjust that in the text comment.
-----------------------------------------------------------------------------------------
# This is a simple list of installations that were found to be
# useful/necessary to build AFNI from source in Linux (64bit) Ubuntu
# machines, first of the 11.* variety and then of the 12.* kind.

# This most recent list was used on an Ubuntu 12.10 machine in early
# September, 2013.  It appears to continue working on Ubuntu 14.04.

# NB: there is an accompanying Makefile.linux_Ubuntu_64bit which was
# used in conjunction with this list.  Just copy this makefile into
# the afni_src/ directory with the simple name 'Makefile'.

# If you would like to easily enable OpenMP capabilities for speedup
# using some parallelized AFNI programs, then you can make the
# afni_src/Makefile using using 'Makefile.linux_ubuntu_12_64_OMP'.
# Please check the online documentation for system requisites
# (versions of gcc compiler, etc.). If you choose this option, you can
# set the max number of processors to use (<=the number on your
# computer), by adding the following line to your computer's ~/.bashrc
# file:
#    export OMP_NUM_THREADS=N
# where you replace 'N' with your specific number.

# This (executable) file should be executable by typing:
# $ chmod 755 OS_notes.linux_Ubuntu_64bit.txt
# $ ./OS_notes.linux_Ubuntu_64bit.txt
# in a terminal window; you could also copy/past the commands into a
# terminal window, if you wish.  You may be prompted about whether to 
# install some packages, to which methinks you should say yes (since 
# you are running this script in the first place; that is, unless you 
# are about some specific dependency problem elsewhere on the machine).

sudo apt-get install libnifti-dev
sudo apt-get install libnifti2
sudo apt-get install zlib1g
sudo apt-get install zlib1g-dev
sudo apt-get install libxt-dev
sudo apt-get install apt-file
sudo apt-get install libmotif4
sudo apt-get install libxt6
sudo apt-get install x11proto-print-dev
sudo apt-get install libmotif-dev
sudo apt-get install libxmu-headers
sudo apt-get install libglu1-mesa-dev
sudo apt-get install libxmu-dev
sudo apt-get install libexpat1-dev 
sudo apt-get install xmhtml1-dev
sudo apt-get install libxpm-dev
sudo apt-get install libmotif-dev
sudo apt-get install motif-clients
sudo apt-get install freeglut3-dev
sudo apt-get install libxi-dev 
sudo apt-get install libglw1-mesa-dev
sudo apt-get install libglib2.0-dev
sudo apt-get install libglib2.0
sudo apt-get install libgsl0-dev
sudo apt-get install libxp-dev
sudo apt-get install tcsh
Subject Author Posted

installing AFNI linux_openmp_64 on Ubuntu 14.04.2

mrif July 28, 2015 11:44AM

Re: installing AFNI linux_openmp_64 on Ubuntu 14.04.2

rick reynolds July 28, 2015 12:00PM

Re: installing AFNI linux_openmp_64 on Ubuntu 14.04.2

mrif July 28, 2015 12:16PM

Re: installing AFNI linux_openmp_64 on Ubuntu 14.04.2

ptaylor July 28, 2015 12:07PM

Re: installing AFNI linux_openmp_64 on Ubuntu 14.04.2

rick reynolds July 28, 2015 12:22PM

Re: installing AFNI linux_openmp_64 on Ubuntu 14.04.2

ptaylor July 28, 2015 12:32PM