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Dear AFNI users-

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mrif
August 26, 2015 12:07PM
Gang,

Thank you for your response.

I keep getting the following error message:

** Error:
Incorrect level coding in variable group : group2

Here is my setup:

3dMVM -prefix MVM_results -jobs 4 \
-bsVars 'group' \
-wsVars 'run' \
-mask group_mask.nii \
-num_glt 5 \
-gltLabel 1 group_by_run_interaction -gltCode 1 'group : 1*group1 -1*group2 run: 1*run1 -1*run2' \
-gltLabel 2 group1_run1_vs_run2 -gltCode 2 'group : 1*group1 run: 1*run1 -1*run2' \
-gltLabel 3 group2_run1_vs_run2 -gltCode 3 'group : 1*group2 run: 1*run1 -1*run2' \
-gltLabel 4 run1-group1_vs_group2 -gltCode 4 'group : 1*group1 -1*group2 run: 1*run1 ' \
-gltLabel 5 run2-group1_vs_group2 -gltCode 5 'group : 1*group1 -1*group2 run: 1*run2 ' \
-num_glf 1 \
-glfLabel 1 F-group_by-run -glfCode 1 'group : 1*group1 -1*group2 run: 1*run1 -1*run2' \
-dataTable \
Subj group run InputFile \
s1 group1 run1 /location/files/subj1/file_subj1_run1.nii\
s1 group1 run2 /location/files/subj1/file_subj1_run2.nii\
s2 group1 run1 /location/files/subj3/file_subj3_run1.nii\
s2 group1 run2 /location/files/subj3/file_subj3_run2.nii\
s3 group1 run1 /location/files/subj4/file_subj4_run1.nii\
s3 group1 run2 /location/files/subj4/file_subj4_run2.nii\
s4 group1 run1 /location/files/subj5/file_subj5_run1.nii\
s4 group1 run2 /location/files/subj5/file_subj5_run2.nii\
s5 group1 run1 /location/files/subj6/file_subj6_run1.nii\
s5 group1 run2 /location/files/subj6/file_subj6_run2.nii\
s6 group1 run1 /location/files/subj7/file_subj7_run1.nii\
s6 group1 run2 /location/files/subj7/file_subj7_run2.nii\
s7 group1 run1 /location/files/subj9/file_subj9_run1.nii\
s7 group1 run2 /location/files/subj9/file_subj9_run2.nii\
s8 group1 run1 /location/files/subj10/file_subj10_run1.nii\
s8 group1 run2 /location/files/subj10/file_subj10_run2.nii\
s9 group1 run1 /location/files/subj11/file_subj11_run1.nii\
s9 group1 run2 /location/files/subj11/file_subj11_run2.nii\
s10 group1 run1 /location/files/subj12/file_subj12_run1.nii\
s10 group1 run2 /location/files/subj12/file_subj12_run2.nii\
s11 group1 run1 /location/files/subj13/file_subj13_run1.nii\
s11 group1 run2 /location/files/subj13/file_subj13_run2.nii\
s12 group1 run1 /location/files/subj14/file_subj14_run1.nii\
s12 group1 run2 /location/files/subj14/file_subj14_run2.nii\
s13 group2 run1 /location/files/subj16/file_subj16_run1.nii\
s13 group2 run2 /location/files/subj16/file_subj16_run2.nii\
s14 group2 run1 /location/files/subj17/file_subj17_run1.nii\
s14 group2 run2 /location/files/subj17/file_subj17_run2.nii\
s15 group2 run1 /location/files/subj19/file_subj19_run1.nii\
s15 group2 run2 /location/files/subj19/file_subj19_run2.nii\
s16 group2 run1 /location/files/subj20/file_subj20_run1.nii\
s16 group2 run2 /location/files/subj20/file_subj20_run2.nii\
s17 group2 run1 /location/files/subj21/file_subj21_run1.nii\
s17 group2 run2 /location/files/subj21/file_subj21_run2.nii\
s18 group2 run1 /location/files/subj22/file_subj22_run1.nii\
s18 group2 run2 /location/files/subj22/file_subj22_run2.nii\
s19 group2 run1 /location/files/subj24/file_subj24_run1.nii\
s19 group2 run2 /location/files/subj24/file_subj24_run2.nii\
s20 group2 run1 /location/files/subj25/file_subj25_run1.nii\
s20 group2 run2 /location/files/subj25/file_subj25_run2.nii


Essentially, we want the the F group_by_run interaction term, the main effects for Group and Run, and the post-hoc interaction comparisons.

Michael
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Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif August 25, 2015 01:47PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang August 25, 2015 04:18PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif August 26, 2015 12:07PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang August 26, 2015 02:48PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif August 27, 2015 01:09PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang August 27, 2015 06:14PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif August 28, 2015 08:28PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif October 02, 2015 01:15PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang October 03, 2015 01:48PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif October 03, 2015 02:57PM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang October 05, 2015 11:17AM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

mrif October 08, 2015 08:54AM

Re: Setting up a 2 x 2 Mixed Anova with 3dMVM

gang October 08, 2015 03:21PM