AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 26, 2015 09:53AM
Hi Daniel,

Your previous software is probably setting the sform_code
to 2 in the NIFTI dataset. Since some packages have used
that to imply standard space, it has become ambiguous.

Set AFNI_NIFTI_VIEW to "orig", maybe in your .afnirc file,
and then try again. Or as a test, simply:

setenv AFNI_NIFTI_VIEW orig
3dcopy old.nii new.2

- rick
Subject Author Posted

how to let 3dcopy generate +orig instead of +tlrc ?

danielyang August 25, 2015 08:06PM

Re: how to let 3dcopy generate +orig instead of +tlrc ?

rick reynolds August 26, 2015 09:53AM