AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 03, 2015 02:24PM
Thanks a lot for your help and in regards to D. that makes total sense

3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD \
-censor censor_${subj}_combined_2.1D \
-polort 3 \
-local_times \
-num_stimts 8 \
-stim_times_AM2 1 stimuli/flcond.1D 'TENT(0,15.4,22)' \
-stim_label 1 flcond \
-stim_times_AM2 2 stimuli/flincd.1D 'TENT(0,15.4,22)' \
-stim_label 2 flincd \
-stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll \
-stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch \
-stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw \
-stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS \
-stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL \
-stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP \
-iresp 1 iresp_flcond.$subj \
-iresp 2 iresp_flincd.$subj \
-gltsym 'SYM: +flincd -flcond' \
-glt_label 1 Inc-Con \
-float \
-jobs 3 \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-x1D_uncensored X.nocensor.xmat.1D \
-fitts fitts.$subj \
-errts errts.${subj} \
-bucket stats.$subj

My TR is 700ms. I want my tents to be TR locked. I assumed that it was time locked since you can break a 15.4 sec period into 22 700ms periods. Is there something I need to do with the code in order to ensure TR-locking? Note: my iresp don't seem to have the same values as my subbricks in my stats file. Also, I only get 22 coeffs plus an additional coeff (maybe a intercept) in the iresp files but I have 22 RT coeffs for each condition.
Subject Author Posted

Tent to PSC Question

s1110a September 03, 2015 02:07AM

Re: Tent to PSC Question

rick reynolds September 03, 2015 09:39AM

Re: Tent to PSC Question

s1110a September 03, 2015 02:24PM

Re: Tent to PSC Question

rick reynolds September 03, 2015 03:53PM

Re: Tent to PSC Question

s1110a September 03, 2015 08:05PM