Hi,

I am attempting to analyze resting state data and I ran a 3dDeconvolve and received the following error message:

*+ WARNING: -------------------------------------------------
*+ WARNING: Problems with the X matrix columns, listed below:
*+ WARNING: !! * Columns 0 [Run#1Pol#0] and 10 [WM#0] are (nearly?) collinear!
*+ WARNING: -------------------------------------------------
** ERROR: !! 3dDeconvolve: Can't run past 1 matrix warnings without '-GOFORIT 1'
** ERROR: !! Currently at -GOFORIT 0
** ERROR: !! See file 3dDeconvolve.err for all WARNING and ERROR messages !!
** ERROR: !! Be sure you understand what you are doing before using -GOFORIT !!
** ERROR: !! If in doubt, consult with someone or with the AFNI message board !!
** FATAL ERROR: !! 3dDeconvolve (regretfully) shuts itself down !!

I used GOFORIT and it worked but how will this affect the connectivity analysis?

Thanks,

Heather

Regressors I used are below if that helps.

-num_stimts 126 \
-stim_file 1 Rest1Motion.difle'[1]' \
-stim_file 2 Rest1Motion.difle'[2]' \
-stim_file 3 Rest1Motion.difle'[3]' \
-stim_file 4 Rest1Motion.difle'[4]' \
-stim_file 5 Rest1Motion.difle'[5]' \
-stim_file 6 Rest1Motion.difle'[6]' \
-stim_file 7 WM.R1_Timecourse.1D \
-stim_file 8 CSF.R1_Timecourse.1D \
-stim_file 9 bandpassregressor.1D'[0]' \
-stim_file 10 bandpassregressor.1D'[1]' \
-stim_file 11 bandpassregressor.1D'[2]' \
-stim_file 12 bandpassregressor.1D'[3]' \
-stim_file 13 bandpassregressor.1D'[4]' \
-stim_file 14 bandpassregressor.1D'[5]' \
-stim_file 15 bandpassregressor.1D'[6]' \
-stim_file 16 bandpassregressor.1D'[7]' \
-stim_file 17 bandpassregressor.1D'[8]' \
-stim_file 18 bandpassregressor.1D'[9]' \
-stim_file 19 bandpassregressor.1D'[10]' \
-stim_file 20 bandpassregressor.1D'[11]' \
-stim_file 21 bandpassregressor.1D'[12]' \
-stim_file 22 bandpassregressor.1D'[13]' \
-stim_file 23 bandpassregressor.1D'[14]' \
-stim_file 24 bandpassregressor.1D'[15]' \
-stim_file 25 bandpassregressor.1D'[16]' \
-stim_file 26 bandpassregressor.1D'[17]' \
-stim_file 27 bandpassregressor.1D'[18]' \
-stim_file 28 bandpassregressor.1D'[19]' \
-stim_file 29 bandpassregressor.1D'[20]' \
-stim_file 30 bandpassregressor.1D'[21]' \
-stim_file 31 bandpassregressor.1D'[22]' \
-stim_file 32 bandpassregressor.1D'[23]' \
-stim_file 33 bandpassregressor.1D'[24]' \
-stim_file 34 bandpassregressor.1D'[25]' \
-stim_file 35 bandpassregressor.1D'[26]' \
-stim_file 36 bandpassregressor.1D'[27]' \
-stim_file 37 bandpassregressor.1D'[28]' \
-stim_file 38 bandpassregressor.1D'[29]' \
-stim_file 39 bandpassregressor.1D'[30]' \
-stim_file 40 bandpassregressor.1D'[31]' \
-stim_file 41 bandpassregressor.1D'[32]' \
-stim_file 42 bandpassregressor.1D'[33]' \
-stim_file 43 bandpassregressor.1D'[34]' \
-stim_file 44 bandpassregressor.1D'[35]' \
-stim_file 45 bandpassregressor.1D'[36]' \
-stim_file 46 bandpassregressor.1D'[37]' \
-stim_file 47 bandpassregressor.1D'[38]' \
-stim_file 48 bandpassregressor.1D'[39]' \
-stim_file 49 bandpassregressor.1D'[40]' \
-stim_file 50 bandpassregressor.1D'[41]' \
-stim_file 51 bandpassregressor.1D'[42]' \
-stim_file 52 bandpassregressor.1D'[43]' \
-stim_file 53 bandpassregressor.1D'[44]' \
-stim_file 54 bandpassregressor.1D'[45]' \
-stim_file 55 bandpassregressor.1D'[46]' \
-stim_file 56 bandpassregressor.1D'[47]' \
-stim_file 57 bandpassregressor.1D'[48]' \
-stim_file 58 bandpassregressor.1D'[49]' \
-stim_file 59 bandpassregressor.1D'[50]' \
-stim_file 60 bandpassregressor.1D'[51]' \
-stim_file 61 bandpassregressor.1D'[52]' \
-stim_file 62 bandpassregressor.1D'[53]' \
-stim_file 63 bandpassregressor.1D'[54]' \
-stim_file 64 bandpassregressor.1D'[55]' \
-stim_file 65 bandpassregressor.1D'[56]' \
-stim_file 66 bandpassregressor.1D'[57]' \
-stim_file 67 bandpassregressor.1D'[58]' \
-stim_file 68 bandpassregressor.1D'[59]' \
-stim_file 69 bandpassregressor.1D'[60]' \
-stim_file 70 bandpassregressor.1D'[61]' \
-stim_file 71 bandpassregressor.1D'[62]' \
-stim_file 72 bandpassregressor.1D'[63]' \
-stim_file 73 bandpassregressor.1D'[64]' \
-stim_file 74 bandpassregressor.1D'[65]' \
-stim_file 75 bandpassregressor.1D'[66]' \
-stim_file 76 bandpassregressor.1D'[67]' \
-stim_file 77 bandpassregressor.1D'[68]' \
-stim_file 78 bandpassregressor.1D'[69]' \
-stim_file 79 bandpassregressor.1D'[70]' \
-stim_file 80 bandpassregressor.1D'[71]' \
-stim_file 81 bandpassregressor.1D'[72]' \
-stim_file 82 bandpassregressor.1D'[73]' \
-stim_file 83 bandpassregressor.1D'[74]' \
-stim_file 84 bandpassregressor.1D'[75]' \
-stim_file 85 bandpassregressor.1D'[76]' \
-stim_file 86 bandpassregressor.1D'[77]' \
-stim_file 87 bandpassregressor.1D'[78]' \
-stim_file 88 bandpassregressor.1D'[79]' \
-stim_file 89 bandpassregressor.1D'[80]' \
-stim_file 90 bandpassregressor.1D'[81]' \
-stim_file 91 bandpassregressor.1D'[82]' \
-stim_file 92 bandpassregressor.1D'[83]' \
-stim_file 93 bandpassregressor.1D'[84]' \
-stim_file 94 bandpassregressor.1D'[85]' \
-stim_file 95 bandpassregressor.1D'[86]' \
-stim_file 96 bandpassregressor.1D'[87]' \
-stim_file 97 bandpassregressor.1D'[88]' \
-stim_file 98 bandpassregressor.1D'[89]' \
-stim_file 99 bandpassregressor.1D'[90]' \
-stim_file 100 bandpassregressor.1D'[91]' \
-stim_file 101 bandpassregressor.1D'[92]' \
-stim_file 102 bandpassregressor.1D'[93]' \
-stim_file 103 bandpassregressor.1D'[94]' \
-stim_file 104 bandpassregressor.1D'[95]' \
-stim_file 105 bandpassregressor.1D'[96]' \
-stim_file 106 bandpassregressor.1D'[97]' \
-stim_file 107 bandpassregressor.1D'[98]' \
-stim_file 108 bandpassregressor.1D'[99]' \
-stim_file 109 bandpassregressor.1D'[100]' \
-stim_file 110 bandpassregressor.1D'[101]' \
-stim_file 111 bandpassregressor.1D'[102]' \
-stim_file 112 bandpassregressor.1D'[103]' \
-stim_file 113 bandpassregressor.1D'[104]' \
-stim_file 114 bandpassregressor.1D'[105]' \
-stim_file 115 bandpassregressor.1D'[106]' \
-stim_file 116 bandpassregressor.1D'[107]' \
-stim_file 117 bandpassregressor.1D'[108]' \
-stim_file 118 bandpassregressor.1D'[109]' \
-stim_file 119 bandpassregressor.1D'[110]' \
-stim_file 120 bandpassregressor.1D'[111]' \
-stim_file 121 Rest1motion_deriv.1D'[1]' \
-stim_file 122 Rest1motion_deriv.1D'[2]' \
-stim_file 123 Rest1motion_deriv.1D'[3]' \
-stim_file 124 Rest1motion_deriv.1D'[4]' \
-stim_file 125 Rest1motion_deriv.1D'[5]' \
-stim_file 126 Rest1motion_deriv.1D'[6]' \

-errts errts.${Sub}

gzip *BRIK

end