I'm trying to plot functional contrasts generated by SPM (after pre-processing) on an individual brain, but when I go to create the SUMA dataset I get the following error:
bash-3.2$ 3dVol2Surf -spec /Users/####/Data/CMC01/Freesurfer_Reconstruction/SUMA/CMC01_rh.spec -surf_A rh.smoothwm -surf_B rh.pial -sv $f -map_func ave -out_niml rh.$f.niml.dset -grid_parent $f
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as spmT_0001.nii,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
bash-3.2$ 3dVol2Surf -spec /Users/####/Data/CMC01/Freesurfer_Reconstruction/SUMA/CMC01_lh.spec -surf_A lh.smoothwm -surf_B lh.pial -sv $f -map_func ave -out_niml lh.$f.niml.dset -grid_parent $f
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as spmT_0001.nii,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
++ Oblique dataset:spmT_0001.nii is 0.019782 degrees from plumb.
This is the same command I use for plotting the same data (but normalized) on an MNI brain, and that works perfectly. Is there an error with the surface render data itself that's causing the problem?
Edited 1 time(s). Last edit at 11/23/2015 12:23PM by sonder.