AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 24, 2008 12:41PM
Hi all,

I've been collecting oblique EPI and DTI datasets and a sagittal anatomical dataset. I've read Daniel Glen's "Dealing with Obliquity in AFNI," and when I attempt to oblique my anatomical, it doesn't align with the EPI datasets. I have been using 3dAllineate to co-register my functional and anatomical datasets, which seems to do a very good job. Do I need to worry about obliquing/de-obliquing datasets when using 3dAllineate? What about when I warp into standard space (e.g., tlrc)? The error messages I've been getting with the new version of AFNI are causing me to be concerned.

Thanks for you help!
-Bonnie

Subject Author Posted

3dAllineate and oblique data

Bonnie January 24, 2008 12:41PM

Re: 3dAllineate and oblique data

Daniel Glen January 24, 2008 02:01PM

Re: 3dAllineate and oblique data

Bonnie January 24, 2008 03:02PM

Re: 3dAllineate and oblique data

Bonnie January 24, 2008 03:18PM

Re: 3dAllineate and oblique data

Daniel Glen January 24, 2008 03:28PM

Re: 3dAllineate and oblique data

Bonnie January 24, 2008 05:10PM

Re: 3dAllineate and oblique data

Daniel Glen January 24, 2008 05:18PM

Re: 3dAllineate and oblique data

Bonnie January 28, 2008 04:38PM

Re: 3dAllineate and oblique data

Daniel Glen January 28, 2008 05:36PM

Re: 3dAllineate and oblique data

Bonnie January 29, 2008 03:26PM

Re: 3dAllineate and oblique data

Daniel Glen January 29, 2008 03:39PM

Re: 3dAllineate and oblique data

Bonnie January 30, 2008 03:35PM

Re: 3dAllineate and oblique data

Daniel Glen January 30, 2008 03:56PM

Re: 3dAllineate and oblique data

AjaySK October 17, 2014 01:56AM

Re: 3dAllineate and oblique data

Daniel Glen October 17, 2014 10:29AM

Re: 3dAllineate and oblique data

AjaySK October 17, 2014 11:41AM

Re: 3dAllineate and oblique data

AjaySK October 17, 2014 12:42PM

Re: 3dAllineate and oblique data

Daniel Glen October 17, 2014 02:35PM

Re: 3dAllineate and oblique data

AjaySK October 17, 2014 02:49PM

Re: 3dAllineate and oblique data

Daniel Glen October 17, 2014 01:30PM

Re: 3dAllineate and oblique data

Peter Molfese October 17, 2014 01:37PM

Re: 3dAllineate and oblique data

AjaySK October 17, 2014 02:46PM

Re: 3dAllineate and oblique data

Emmanuelle Renauld November 18, 2016 11:13AM

Re: 3dAllineate and oblique data

Daniel Glen November 29, 2016 03:10AM