We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
I am trying to brain extract rat T2 structural data and would like to use 3dSkullStrip. I've tried using it with the -rat option but the output files all appear blank. Is it possible to use this function on T2 data? Also, I get a warning saying "NO spatial transform (neither qform nor sform), in NIfTI file". Would it make sense to try a spatial transformation and run 3dSkullStrip again?