AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 23, 2014 03:32PM
Hello,

I am trying to brain extract rat T2 structural data and would like to use 3dSkullStrip. I've tried using it with the -rat option but the output files all appear blank. Is it possible to use this function on T2 data? Also, I get a warning saying "NO spatial transform (neither qform nor sform), in NIfTI file". Would it make sense to try a spatial transformation and run 3dSkullStrip again?

Thanks for your help,

best,
Mike
Subject Author Posted

3dSkullStrip on mouse/rat/rodent

Nachiket Nadkarni June 23, 2008 05:38AM

Re: 3dSkullStrip on mouse/rat/rodent

Uenal Sakoglu July 30, 2010 03:08PM

Re: 3dSkullStrip on mouse/rat/rodent

Daniel Glen August 02, 2010 10:49AM

Re: 3dSkullStrip on mouse/rat/rodent

craigmichaelm September 23, 2014 03:32PM

Re: 3dSkullStrip on mouse/rat/rodent

ziad September 23, 2014 06:02PM