AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 23, 2014 06:02PM
Hi Mike,

Hard to tell. We do use 3dSkullStrip on T2 human data and it is OK for that, usually. For a rat T2, I can't tell and I can't tell if the absence of a spatial transform is the cause of the problem without more info. If the T2 volume looks OK in AFNI then the transform is not the problem. Have you tried to use the -visual option in 3dSkullStrip to determine what might be going awry?

cheers
Ziad
Subject Author Posted

3dSkullStrip on mouse/rat/rodent

Nachiket Nadkarni June 23, 2008 05:38AM

Re: 3dSkullStrip on mouse/rat/rodent

Uenal Sakoglu July 30, 2010 03:08PM

Re: 3dSkullStrip on mouse/rat/rodent

Daniel Glen August 02, 2010 10:49AM

Re: 3dSkullStrip on mouse/rat/rodent

craigmichaelm September 23, 2014 03:32PM

Re: 3dSkullStrip on mouse/rat/rodent

ziad September 23, 2014 06:02PM