AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
Daniel Glen
January 14, 2012 08:59AM
Try adding "-giant_move" in case these started off far from each other. Here is a suggested command that doesn't include the volume registration. If you want to try volume registration, try "-volreg_method 3dAllineate".

align_epi_anat.py -anat anat3d+orig. -epi run5+orig. -epi_base 0 -suffix _al2dti -prep_off -giant_move -epi_strip 3dAutomask -AddEdge -epi2anat

If this still doesn't work for you, please upload the data using the link on the left.
Subject Author Posted

DTI and anat aligning issues

Megan August 27, 2008 08:10PM

Re: DTI and anat aligning issues

Daniel Glen August 28, 2008 08:27AM

Re: DTI and anat aligning issues

Megan August 28, 2008 07:23PM

Re: DTI and anat aligning issues

Peter Molfese January 13, 2012 04:52PM

Re: DTI and anat aligning issues

Daniel Glen January 14, 2012 08:59AM

Re: DTI and anat aligning issues

Peter Molfese February 28, 2012 03:15PM

Re: DTI and anat aligning issues

Daniel Glen February 28, 2012 07:23PM

Re: DTI and anat aligning issues

Peter Molfese February 29, 2012 08:33AM