Skip to content

AFNI/NIfTI Server

Sections
Personal tools
You are here: Home » AFNI » Community » Message Board

History of AFNI updates   Suggested reading for beginners   Add yourself to the AFNI map!

Error with gen_ss_review_scripts.py

|
June 13, 2012 04:25PM
Hello,

I am trying to run gen_ss_review_scripts.py after completing pre-processing and 3dDeconvolve. I have all the required files listed on the help page together in one directory, but none of the optional ones because censoring was not done. However, when I run the script, it appears to be searching for those optional files anyway and giving me this error message:


** failed to guess sum_ideal file, continuing...
** failed to find mask dset, continuing...
Traceback (most recent call last):
File "/usr/local/bin/afni/gen_ss_review_scripts.py", line 2029, in <module>
sys.exit(main())
File "/usr/local/bin/afni/gen_ss_review_scripts.py", line 2017, in main
if me.init_basics():
File "/usr/local/bin/afni/gen_ss_review_scripts.py", line 711, in init_basics
if self.guess_tsnr_dset(): return 1
File "/usr/local/bin/afni/gen_ss_review_scripts.py", line 1271, in guess_tsnr_dset
% (self.uvars.subj, self.uvars.final_view)
TypeError: not all arguments converted during string formatting


How do I get around this problem? I would like to review the pre-processing results for quality control purposes.

Thank you!
Subject Author Posted

Error with gen_ss_review_scripts.py

lianablair June 13, 2012 04:25PM

Re: Error with gen_ss_review_scripts.py

rick reynolds June 13, 2012 08:43PM

Re: Error with gen_ss_review_scripts.py

lianablair June 15, 2012 10:38AM

Re: Error with gen_ss_review_scripts.py

rick reynolds June 15, 2012 10:42AM

Re: Error with gen_ss_review_scripts.py

lianablair June 19, 2012 07:38PM

Re: Error with gen_ss_review_scripts.py

rick reynolds June 19, 2012 08:59PM

Re: Error with gen_ss_review_scripts.py

lianablair June 20, 2012 11:41AM



Author:

Your Email:


Subject:


Spam prevention:
Please, enter the code that you see below in the input field. This is for blocking bots that try to post this form automatically. If the code is hard to read, then just try to guess it right. If you enter the wrong code, a new image is created and you get another chance to enter it right.
CAPTCHA
Message:

Powered by Plone

phorum.org

This site conforms to the following standards: