Hi Rick,
Thanks for your help. I did update the binaries and I was able to run the script. However, now I'm running into other problems. When I try to run the review scripts that are generated, I get different errors.
I put everything into the subj.results folder, including the @ss_review_basic, @ss_review_driver, and @ss_review_driver_commands. When inside of that subj.results folder I try to run the commands by just entering @ss_review_basic in the shell window, but get a "command not found" error. I'm not sure why this would be. When I put "bash" in front of the command, it does recognize the command and tries to run it but returns the following errors.
With @ss_review_basic:
subject ID :
@ss_review_basic: line 115: syntax error near unexpected token `('
@ss_review_basic: line 115: `set tcat_files = ( `find . -maxdepth 1 -name "pb00*$subj*.HEAD" -print` )'
With @ss_review_driver:
@ss_review_driver: line 155: syntax error near unexpected token `('
@ss_review_driver: line 155: `set pp = ( `3dBrickStat -slow -percentile 90 1 90 \'
I'm not sure what the problem is, so any suggestions you have would be greatly appreciated. This is my first time using afni so it's definitely a steep learning curve.
Thank you very much!