Hi everybody,

I've generated some surfaces using freesurfer for the MNI152_T1_1mm brain included in FSL and run @SUMA_Make_Spec_FS -sid mni152_T1_1mm in the freesurfer subject which generated a SUMA directory for me.

(I'm using the MNI152 brain because the registration to standard space was done with FLIRT & FNIRT.)

When I try to overlay some stat data that has been registered to a 3mm version of the 1mm brain I get a substantial misalignment, as shown in the attached image (well it would if I could figure out how to attach images in the new version of the message board). When I've previously tried to do this with the TLRC surfaces you guys make available (and a TLRC overlay in AFNI) I had no such problems. I tried 3drefit -space MNI -view tlrc mni152_T1_1mm_SurfVol+tlrc.HEAD but the only difference that made is that AFNI doesn't complain about switching from orig to standard view, the misalignment remains.

Since I'm not too familiar with SUMA (I only use it to make pretty pictures) I'm not sure what is causing the misalignment. Any idea what I should do next?

Thanks,

Colm.