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AFNI program -help files

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AFNI program -help files

Results of running each program with the -help option
*All -help Files on One VERY Long Page*

*Common options for most AFNI programs*

*Detailed History of AFNI software changes*

Links in the Table Below are to Individual -help Files
1dFlagMotion 1dMarry 1dSEM 1dTsort
1dUpsample 1dcat 1ddot 1deval
1dfft 1dgrayplot 1dmatcalc 1dnorm
1dplot 1dsum 1dsvd 1dtranspose
24swap 2dImReg 2swap 3dAFNIto3D
3dAFNItoANALYZE 3dAFNItoMINC 3dAFNItoNIFTI 3dAFNItoNIML
3dAFNItoRaw 3dANALYZEtoAFNI 3dANOVA 3dANOVA2
3dANOVA3 3dAcost 3dAllineate 3dAnatNudge
3dAnhist 3dAttribute 3dAutoTcorrelate 3dAutobox
3dAutomask 3dBRAIN_VOYAGERtoAFNI 3dBlurToFWHM 3dBrickStat
3dCM 3dCRUISEtoAFNI 3dClipLevel 3dConvolve
3dDFT 3dDTeig 3dDWItoDT 3dDeconvolve
3dDeconvolve_f 3dDespike 3dDetrend 3dEmpty
3dEntropy 3dErrtsCormat 3dExtrema 3dFDR
3dFWHM 3dFWHMx 3dFourier 3dFriedman
3dGetrow 3dIntracranial 3dInvFMRI 3dKruskalWallis
3dLRflip 3dLocalBistat 3dLocalCormat 3dLocalSVD
3dLocalstat 3dMINCtoAFNI 3dMannWhitney 3dMean
3dMedianFilter 3dNLfim 3dNotes 3dOverlap
3dPAR2AFNI.pl 3dROIstats 3dRegAna 3dRowFillin
3dSkullStrip 3dStatClust 3dSurf2Vol 3dSurfMask
3dSurfMaskDump 3dSynthesize 3dTSgen 3dTagalign
3dTcat 3dTcorrelate 3dTfitter 3dThreetoRGB
3dToutcount 3dTqual 3dTshift 3dTsmooth
3dTsort 3dTstat 3dTwotoComplex 3dUndump
3dUniformize 3dUpsample 3dVol2Surf 3dWarp
3dWarpDrive 3dWavelets 3dWilcoxon 3dWinsor
3dZcat 3dZcutup 3dZeropad 3dZregrid
3danisosmooth 3daxialize 3dbuc2fim 3dbucket
3dcalc 3dclust 3dcopy 3ddelay
3ddot 3ddup 3dedge3 3dfim
3dfim+ 3dfractionize 3dhistog 3dinfo
3dmaskave 3dmaskdump 3dmatcalc 3dmaxima
3dmerge 3dnewid 3dnoise 3dnvals
3dpc 3dproject 3drefit 3drename
3dresample 3dretroicor 3drotate 3dsvm
3dttest 3dvolreg 4swap @4Daverage
@AddEdge @AfniOrient2RAImap @Align_Centers @Center_Distance
@CheckForAfniDset @CommandGlobb @DTI_studio_reposition @DoPerRoi.py
@FromRAI @GetAfniDims @GetAfniID @GetAfniOrient
@GetAfniPrefix @GetAfniRes @GetAfniView @IsoMasks
@NoExt @NoisySkullStrip @Purify_1D @RenamePanga
@SUMA_AlignToExperiment @SUMA_FSvolToBRIK @SUMA_Make_Spec_Caret @SUMA_Make_Spec_FS
@SUMA_Make_Spec_SF @ScaleVolume @ShowDynamicRange @SurfSmooth.HEAT_07.examples
@TTxform_anat @ToRAI @UpdateAfni @VolCenter
@align_partial_oblique @auto_align @auto_tlrc @clip_volume
@fix_FSsphere @float_fix @isOblique @make_stim_file
@np @parse_afni_name @parse_name @statauxcode
AFNI.afnirc AlphaSim AnalyzeTrace CompareSurfaces
ConvertDset ConvertSurface ConvexHull CreateIcosahedron
DTIStudioFibertoSegments Dimon DriveSuma FSread_annot
Ifile Imon IsoSurface MakeColorMap
MapIcosahedron ROI2dataset ROIgrow RSFgen
SampBias ScaleToMap Surf2VolCoord SurfClust
SurfDist SurfDsetInfo SurfInfo SurfMeasures
SurfMesh SurfPatch SurfQual SurfSmooth
SurfToSurf SurfaceMetrics Vecwarp Xphace
abut adwarp afni afni_history
afni_proc.py afni_vcheck aiv align_epi_anat.py
byteorder cat_matvec ccalc cdf
cjpeg count dicom_hdr dicom_to_raw
djpeg ent16 file_tool float_scan
from3d ftosh ge_header gen_epi_review.py
im2niml imand imaver imcalc
imcat imcutup imdump immask
imreg imrotate imstack imstat
imupsam inspec lpc_align.py make_random_timing.py
make_stim_times.py mayo_analyze mpegtoppm mritopgm
neuro_deconvolve.py nifti1_test nifti_stats nifti_tool
nsize option_list.py plugout_drive plugout_ijk
plugout_tt quickspec rmz rotcom
rtfeedme serial_helper siemens_vision sqwave
strblast suma suma_change_spec to3d
waver whereami whirlgif
README.Ifile README.atlas_building README.attributes README.bzip2
README.changes README.compression README.copyright README.driver
README.environment README.func_types README.notes README.permtest
README.plugouts README.realtime README.registration README.render_scripts
README.roi README.setup README.volreg README.web
README.ziad AFNI.changes.dglen AFNI.changes.rickr AFNI.afnirc
AFNI.Xdefaults
This page auto-generated on Fri Jul 25 01:24:11 EDT 2008 — RWCox

Created by Robert Cox
Last modified 2008-07-25 01:24
latest compile date
25 Jul 2008 00:33 EDT
latest afni version
AFNI_2008_07_18_1710
 
 
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