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AFNI, SUMA and FATCAT: v16.0.11 (doc v2.1)
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Welcome to AFNI’s documentation!
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1. Installation and Background
1.1.
The Authoritative HowTo for Installing AFNI
1.2.
Downloading AFNI/SUMA software
1.3.
Unix Tutorial
1.4.
Basic Bootcamp Prep
2. SUMA
2.1.
Intro
2.2.
SUMA Viewer
2.3.
Controllers
2.4.
SUMA Programming Notes
3. FATCAT
3.1.
FATCAT Commands
3.2.
Dealing with DW gradients: 1dDW_Grad_o_Mat
3.3.
Making (networks of) ROIs: 3dROIMaker
3.4.
Making tracts: 3dTrackID
4. Statistics
4.1.
Statistics in AFNI
5. Tutorials, Demos
5.1.
Self Guided Demo Scripts
5.2.
FATCAT Demo
5.3.
Walnut Brain
5.4.
Contribute Your Own Docs
5.5.
Drawing ROIs
5.6.
Standard Meshes For Group-Level Analysis
5.7.
How to Format Help Strings
6. Demo Material
6.1.
Bootcamp Material
6.2.
FATCAT Demo Install
6.3.
Demo Data:
6.4.
Template Surfaces:
7. Each program’s “Help”
7.1. Help output of AFNI programs
8. Glossary
9. References
Indices and tables
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Index
Module Index
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Table Of Contents
1. Installation and Background
2. SUMA
3. FATCAT
4. Statistics
5. Tutorials, Demos
6. Demo Material
7. Each program’s “Help”
8. Glossary
9. References
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