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AFNI, SUMA and FATCAT: v16.0.11 (doc v2.1)
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1. Installation and Background
¶
1.1.
The Authoritative HowTo for Installing AFNI
1.1.1. Overview
Preamble Ramble
Setting up systems
Optional reading: technical notes around installing
1.1.2.
Complete system setup for: (current) Linux
1.1.3.
Complete system setup for: (modern) Mac OS
1.1.4. FAQ and debugging common error messages
1.2.
Downloading AFNI/SUMA software
1.2.1. Overview
1.2.2. Choosing an AFNI that’s right for
you
A. Updating existing AFNI binaries to the newest version (Linux/Unix or Mac)
B. Downloading a set of the newest precompiled AFNI binaries
C. Downloading the newest AFNI source code
D. Browsing all AFNI packages (and atlases)
1.3.
Unix Tutorial
1.3.1. Setup Pages
1. What is ... ? Unix, tcsh and AFNI
2. Opening a Terminal
3. Installing AFNI (software)
4. Installing AFNI_data6 (sample class data)
1.3.2. Basic Unix Tutorial
1. Basic Unix : setup
2. Basic Unix : basic commands
3. Basic Unix :
bg
and
fg
processes
4. Basic Unix : light intro to shell scripts
5. Basic Unix : special characters
6. Basic Unix : shell variables
1.3.3. Unix commands
1. Unix and shell commands
2. Error messages
1.4.
Basic Bootcamp Prep
Table Of Contents
1. Installation and Background
1.1.
The Authoritative HowTo for Installing AFNI
1.2.
Downloading AFNI/SUMA software
1.3.
Unix Tutorial
1.4.
Basic Bootcamp Prep
2. SUMA
3. FATCAT
4. Statistics
5. Tutorials, Demos
6. Demo Material
7. Each program’s “Help”
8. Glossary
9. References
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