ABUT: put noncontiguous FMRI slices together [for to3d]
[-linear | -blocky] [-verbose] [-skip n+gap] ... images ...
- -dzin the thickness value in mm; if not given,
- taken to be 1.0 (in which case, the output thickness and gap sizes are simply relative to the slice thickness, rather than absolute)
- -dzout the output slice thickness, usually smaller than
- the input thickness; if not given, the program will compute a value (the smaller the ratio dzout/dzin is, the more slices will be output)
- -root ‘name’ is the root (or prefix) for the output
- slice filename; for example, ‘-root fred.’ will result in files fred.0001, fred.0002, ...
- -linear if present, this flag indicates that subdivided slices
- will be linearly interpolated rather than simply replicated – this will make the results smoother in the through-slice direction (if dzout < dzin)
- -blocky similar to -linear, but uses AFNI’s ‘blocky’ interpolation
- when possible to put out intermediate slices. Both interpolation options only apply when dzout < dzin and when an output slice has a non-gappy neighbor.
- -skip ‘n+gap’ indicates that a gap is to be inserted
- between input slices #n and #n+1, where n=1,2,...; for example, -skip 6+5.5 means put a gap of 5.5 mm between slices 6 and 7.
More than one -skip option is allowed. They must all occur before the list of input image filenames.
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