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  • AFNI, SUMA and FATCAT: v16.0.11 (doc v2.1) »

Welcome to AFNI’s documentation!¶

  • 1. Installation and Background
    • 1.1. The Authoritative HowTo for Installing AFNI
    • 1.2. Downloading AFNI/SUMA software
    • 1.3. Unix Tutorial
    • 1.4. Basic Bootcamp Prep
  • 2. SUMA
    • 2.1. Intro
    • 2.2. SUMA Viewer
    • 2.3. Controllers
    • 2.4. SUMA Programming Notes
  • 3. FATCAT
    • 3.1. FATCAT Commands
    • 3.2. Dealing with DW gradients: 1dDW_Grad_o_Mat
    • 3.3. Making (networks of) ROIs: 3dROIMaker
    • 3.4. Making tracts: 3dTrackID
  • 4. Statistics
    • 4.1. Statistics in AFNI
  • 5. Tutorials, Demos
    • 5.1. Self Guided Demo Scripts
    • 5.2. FATCAT Demo
    • 5.3. Walnut Brain
    • 5.4. Contribute Your Own Docs
    • 5.5. Drawing ROIs
    • 5.6. Standard Meshes For Group-Level Analysis
    • 5.7. How to Format Help Strings
  • 6. Demo Material
    • 6.1. Bootcamp Material
    • 6.2. FATCAT Demo Install
    • 6.3. Demo Data:
    • 6.4. Template Surfaces:
  • 7. Each program’s “Help”
    • 7.1. Help output of AFNI programs
  • 8. Glossary
  • 9. References

Indices and tables¶

  • Index
  • Module Index
  • Search Page

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Table Of Contents

  • 1. Installation and Background
  • 2. SUMA
  • 3. FATCAT
  • 4. Statistics
  • 5. Tutorials, Demos
  • 6. Demo Material
  • 7. Each program’s “Help”
  • 8. Glossary
  • 9. References

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