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  • AFNI, SUMA and FATCAT: v16.0.11 (doc v2.1) »

3. FATCATΒΆ

  • 3.1. FATCAT Commands
    • 3.1.1. Overview
    • 3.1.2. Demo data sets and scripts
    • 3.1.3. Other: preprocessing and HARDI considerations
    • 3.1.4. Notation Notes
    • 3.1.5. Citation Notes
  • 3.2. Dealing with DW gradients: 1dDW_Grad_o_Mat
    • 3.2.1. Overview
    • 3.2.2. Operations
  • 3.3. Making (networks of) ROIs: 3dROIMaker
    • 3.3.1. Overview
    • 3.3.2. Operation
    • 3.3.3. Using anatomical tissues and diffusion maps
    • 3.3.4. Connectome Parcellation
  • 3.4. Making tracts: 3dTrackID
    • 3.4.1. Overview
    • 3.4.2. Modus operandi
    • 3.4.3. Outputs common to all modes
    • 3.4.4. Outputs specific to {DET|MINIP} modes
    • 3.4.5. Viewing tracked outputs
    • 3.4.6. Inputs for tracking

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Table Of Contents

  • 1. Installation and Background
  • 2. SUMA
  • 3. FATCAT
    • 3.1. FATCAT Commands
    • 3.2. Dealing with DW gradients: 1dDW_Grad_o_Mat
    • 3.3. Making (networks of) ROIs: 3dROIMaker
    • 3.4. Making tracts: 3dTrackID
  • 4. Statistics
  • 5. Tutorials, Demos
  • 6. Demo Material
  • 7. Each program’s “Help”
  • 8. Glossary
  • 9. References

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