7.1.119. 3dPAR2AFNI.pl
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3dPAR2ANFI
Version: 2008/07/18 11:12
Command line Options:
-h This help message.
-v Be verbose in operation.
- -s Skip the outliers test when converting 4D files
- The default is to perform the outliers test.
- -n Output NIfTI files instead of HEAD/BRIK.
- The default is create HEAD/BRIK files.
-a Output ANALYZE files instead of HEAD/BRIK.
- -o The name of the directory where the created files should be
- placed. If this directory does not exist the program exits
without performing any conversion.
The default is to place created files in the same directory
as the PAR files.
- -g Gzip the files created.
- The default is not to gzip the files.
- -2 2-Byte-swap the files created.
- The default is not to 2 byte-swap.
- -4 4-Byte-swap the files created.
- The default is not to 4 byte-swap.
Sample invocations:
3dPAR2AFNI subject1.PAR
Converts the file subject1.PAR file to subject1+orig.{HEAD,BRIK}
- 3dPAR2AFNI -s subject1.PAR
- Same as above but skip the outlier test
- 3dPAR2AFNI -n subject1.PAR
- Converts the file subject1.PAR file to subject1.nii
- 3dPAR2AFNI -n -s subject1.PAR
- Same as above but skip the outlier test
- 3dPAR2AFNI -n -s -o ~/tmp subject1.PAR
- Same as above but skip the outlier test and place the
created NIfTI files in ~/tmp
- 3dPAR2AFNI -n -s -o ~/tmp *.PAR
- Converts all the PAR/REC files in the current directory to
NIfTI files, skip the outlier test and place the created
NIfTI files in ~/tmp