7.1.391. afni_system_check.py

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This program is intended to be helpful for figuring out AFNI installation issues. This is just a start.

examples

  1. afni_system_check.py -check_all
2a. afni_system_check.py -find_prog python 2b. afni_system_check.py -find_prog python -exact yes
-help : show this help
-hist : show program history
-show_valid_opts : show valid options for program
-todo : show current todo list

-ver : show current version

NOTE: either a terminal or an action option is required

action options:

-check_all\ : perform all system checks
  • see section, “details displayed via -check_all”

-data_root DDIR : search for class data under DDIR -find_prog PROG : search PATH for PROG

  • default is PROG, case-insensitive
  • see also -casematch, -exact

other options:

-casematch yes/no : match case in -find_prog
-exact yes/no : search for PROG without wildcards in -find_prog
general information:
  • CPU, operating system and version, # CPUs, login shell
AFNI and related tests:
  • which afni, python, R and tcsh, along with versions
  • check for multiple afni packages in PATH
  • check that various AFNI programs run
python libs:
  • check that various python libraries are found and loaded
path vars:
  • show some environment variables related to the PATH

R Reynolds July, 2013

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