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AFNI, SUMA and FATCAT: v16.0.11 (doc v2.1)
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3. FATCAT
ΒΆ
3.1.
FATCAT Commands
3.1.1. Overview
3.1.2. Demo data sets and scripts
3.1.3. Other: preprocessing and HARDI considerations
3.1.4. Notation Notes
3.1.5. Citation Notes
3.2.
Dealing with DW gradients: 1dDW_Grad_o_Mat
3.2.1. Overview
3.2.2. Operations
3.3.
Making (networks of) ROIs: 3dROIMaker
3.3.1. Overview
3.3.2. Operation
3.3.3. Using anatomical tissues and diffusion maps
3.3.4. Connectome Parcellation
3.4.
Making tracts: 3dTrackID
3.4.1. Overview
3.4.2. Modus operandi
3.4.3. Outputs common to all modes
3.4.4. Outputs specific to
{DET|MINIP}
modes
3.4.5. Viewing tracked outputs
3.4.6. Inputs for tracking
Table Of Contents
1. Installation and Background
2. SUMA
3. FATCAT
3.1.
FATCAT Commands
3.2.
Dealing with DW gradients: 1dDW_Grad_o_Mat
3.3.
Making (networks of) ROIs: 3dROIMaker
3.4.
Making tracts: 3dTrackID
4. Statistics
5. Tutorials, Demos
6. Demo Material
7. Each program’s “Help”
8. Glossary
9. References
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