AFNI HISTORY

The levels of importance go from 1 to 5, with meanings:
       1 - users would not care
       2 - of little importance, though some users might care
       3 - fairly important
       4 - a big change or new program
       5 - IMPORTANT: we expect users to know

generated via the command : afni_history -html -reverse -min_level 3 -past_months 6 

  ----  log of AFNI updates (most recent first)  ----

17 Nov 2009, ZS Saad, suma, level 3 (MAJOR), type 2 (NEW_OPT)
    SUMA now handles labeled datatets in a special manner

    An example of a labeled dataset would be FreeSurfer's annotation files.
    If an annotation file is present in the spec file (@SUMA_Make_Spec_FS),
    SUMA will display it as part of the background.
    You can chose to display the labeled dataset in color, contours, or both.
    Data from labeled datasets is now shown under the 'Lbl' field in the
    surface controller's Xhair block.


19 Oct 2009, DR Glen, align_epi_anat.py, level 3 (MAJOR), type 2 (NEW_OPT)
    New master options, dset1/2 terminology

    New master_nnn_dxyz options to specify output resolution
    dset1 and dset2 for non-EPI/anat alignment with lpa cost function
    and turns off preprocessing steps
    giant_move option turns off resampling and changes master options
    Expanded help - including fuller description of edge method
    Removed volume registration (motion correction) for anat2epi option
    by default.
    AFNI dataset views (+orig/+acpc/+tlrc) are maintained in output
    depending on BASE, SOURCE or external dataset names for all output


06 Oct 2009, ZS Saad, suma, level 3 (MAJOR), type 4 (BUG_FIX)
    More bug fixes related to ROI loading, and OSX's GLX problem


29 Sep 2009, RW Cox, afni, level 3 (MAJOR), type 5 (MODIFY)
    InstaCalc is more-or-less ready

    At least, I let Mike Beauchamp test it for his cunning plans.


24 Sep 2009, ZS Saad, suma, level 3 (MAJOR), type 4 (BUG_FIX)
    Fixed crashes on OS X 10.5 caused by OS X's buggy GLX implementation


22 Jul 2009, RC Reynolds, realtime_reaceiver.py, level 3 (MAJOR), type 1 (NEW_PROG)
    python replacement for serial helper

    New 'data_choice' options can be added to compute_data_for_serial_port
    for sending results of a different computation to the serial port.


16 Jul 2009, RC Reynolds, realtime_receiver.py, level 3 (MAJOR), type 1 (NEW_PROG)
    replacement for serial_helper


17 Jun 2009, RC Reynolds, afni_proc.py, level 3 (MAJOR), type 2 (NEW_OPT)
    version 2.0 : call e2a alignment and warp to standard space ready

    - mask warped EPI by its extents (at volreg step)
    - added -volreg_no_extent_mask, to block this masking
    - added 'extents' to list of mask in -mask_apply
    - change block dividers to more visual '===' with block names