// This is a sample .afnirc file.
// Copy it into your home directory, with the name '.afnirc'.
// Then edit it to your heart's delight.
// See README.setup and README.environment for documentation.

***COLORS
// Define new overlay colors.  These will appear on the color menus.

 salmon = #ff8866
 navy   = navyblue

***ENVIRONMENT

// Most (not all) of the Unix environment variables that affect AFNI

   IDCODE_PREFIX            = AFN  // 3 letter prefix for dataset ID codes

// AFNI_graph_boxes_thick   =  0   // 0=thin lines, 1=thick lines, for graph boxes
// AFNI_graph_grid_thick    =  0   // ditto for the graph vertical grid lines
   AFNI_graph_data_thick    =  1   // ditto for the data graphs
   AFNI_graph_ideal_thick   =  1   // ditto for the ideal graphs
   AFNI_graph_ort_thick     =  1   // ditto for the ort graphs
   AFNI_graph_dplot_thick   =  1   // ditto for the dplot graphs
   AFNI_graph_ggap          =  3   // initial spacing between graph boxes
   AFNI_graph_width         = 512  // initial width of graph window
   AFNI_graph_height        = 384  // initial height of graph window
// AFNI_graph_matrix        =  3   // initial number of sub-graphs
   AFNI_GRAPH_TEXTLIMIT     = 20         // max number of rows shown in Graph popup
// AFNI_GRAPH_BASELINE      = Individual // type of baseline to set in Graph windows
// AFNI_GRAPH_GLOBALBASE    = 0          // value for Global baselines in Graph windows

// AFNI_montage_periodic    = True // allows periodic montage wraparound
// AFNI_purge               = True // allows automatic dataset memory purge

// AFNI_resam_vox           = 1.0  // dimension of voxel (mm) for resampled datasets
// AFNI_resam_anat          = Li   // One of NN, Li, Cu, Bk for Anat resampling mode
// AFNI_resam_func          = NN   // ditto for Func resampling mode
// AFNI_resam_thr           = NN   // for Threshold resampling mode

// AFNI_pbar_posfunc        = True   // will start color pbar as all positive
// AFNI_pbar_sgn_pane_count = 8      // # of panes to start signed color pbar with
// AFNI_pbar_pos_pane_count = 8      // # of panes to start positive color pbar with
// AFNI_pbar_hide           = True   // hide color pbar when it is being altered
// AFNI_PBAR_IMXY           = 200x20 // size of saved pbar color image
// AFNI_PBAR_LOCK           = YES    // lock color pbars together
// AFNI_OVERLAY_ZERO        = NO     // YES==colorize zero values in Overlay dataset

// AFNI_THRESH_LOCK         = YES    // lock threshold sliders together
// AFNI_THRESH_AUTO         = YES    // YES==AFNI guesses a threshold
// AFNI_SLAVE_FUNCTIME      = NO     // YES==time index changes overlay AND underlay
// AFNI_SLAVE_THRTIME       = NO     // YES==time index changes threshold, too

// AFNI_COLORSCALE_DEFAULT  = Spectrum:red_to_blue // initial colorscale for pbar

// AFNI_chooser_listmax     = 20  // max items in a chooser before scrollbars appear
// AFNI_MAX_OPTMENU         = 999 // max # items in an 'option menu'
// AFNI_DONT_MOVE_MENUS     = YES // don't try to move popup menu windows
// AFNI_MENU_COLSIZE        = 30  // max number of entries in a popup menu column
// AFNI_DISABLE_TEAROFF     = NO  // YES==disable the menu 'tearoff' capability

// AFNI_DONT_SORT_ENVIRONMENT = NO   // YES==disable sorting Edit Environment
// AFNI_ORIENT                = RAI  // coordinate order
// AFNI_NOPLUGINS             = NO   // YES==disable plugins
// AFNI_YESPLUGOUTS           = NO   // YES==enable plugouts (POs)
// AFNI_PLUGOUT_TCP_BASE      = 6666 // overrides default TCP/IP socket for plugouts

// AFNI_PLUGINPATH          = /home/rwcox/abin  // directory for plugins
// AFNI_TSPATH              = /home/rwcox/stuff // directory for .1D files
// AFNI_MODELPATH           = /home/rwcox/abin  // directory for NLfim models
// TMPDIR                   = /tmp              // directory for temporary files
// AFNI_GLOBAL_SESSION      = /data/junk        // directory w/datasets you always see

// AFNI_BYTEORDER             = LSB_FIRST // to force .BRIK byte order on output
// AFNI_BYTEORDER_INPUT       = LSB_FIRST // when .HEAD file fails to specify
// AFNI_NO_BYTEORDER_WARNING  = YES       // do NOT print out byte-ordering warning

   AFNI_SESSTRAIL           = 1    // # of directory levels to show in filenames
   AFNI_HINTS               = YES  // YES==turns on popup hints
// AFNI_COMPRESSOR          = gzip // force all .BRIK output to be compressed
   AFNI_AUTOGZIP            = YES  // gzip .BRIK files if it's a good idea
// AFNI_NOMMAP              = YES  // to disable use of mmap() file I/O
   AFNI_LEFT_IS_LEFT        = YES  // YES==show human left on screen left
// AFNI_ENFORCE_ASPECT      = YES  // AFNI to enforce image aspect ratio
   AFNI_ALWAYS_LOCK         = YES  // to start with all AFNI controllers locked
// AFNI_NOREALPATH          = NO   // don't convert filenames to 'real' names
// AFNI_NO_MCW_MALLOC       = NO   // YES==turn off debugging malloc use
   AFNI_FLOATSCAN           = YES  // YES==scan float datasets for errors

// AFNI_NOSPLASH            = NO      // YES==turn off the AFNI splash window
   AFNI_SPLASH_XY           = 444:222 // x:y coordinates for splash window
// AFNI_SPLASHTIME          = 3       // how many seconds splash window stays up
// AFNI_SPLASH_MELT         = NO      // whether to use the 'melt' effect

// AFNI_NOTES_DLINES        = 11   // # of text entry lines in the Notes plugin
// AFNI_MARKERS_NOQUAL      = NO   // YES==AFNI won't do 'quality' for markers
   AFNI_NO_ADOPTION_WARNING = YES  // YES==AFNI won't show dataset 'adoption' warnings
   AFNI_VIEW_ANAT_BRICK     = YES  // try to view data without warp-on-demand
   AFNI_VIEW_FUNC_BRICK     = YES  // try to view data without warp-on-demand
   AFNI_tsplotgeom          = 512x384 // size of time series plot windows
   AFNI_PLUGINS_ALPHABETIZE = YES  // whether to alphabetize Plugins menu
// AFNI_VOLREG_EDGING       = 5    // size of edge region to mask out in 3dvolreg
// AFNI_ROTA_ZPAD           = 5    // size of zero padding to use in 3dvolreg

   AFNI_ncolors               =  80   // number of gray levels to use in underlay
   AFNI_gamma                 =  1.7  // gamma correction for underlay intensities
   AFNI_GRAYSCALE_BOT         = 25    // minimum image intensity graylevel (0-255)
   AFNI_IMAGE_MINFRAC         = 0.04  // minimum size of AFNI image window
   AFNI_IMAGE_MAXFRAC         = 0.88  // maximum size of AFNI image window
// AFNI_IMAGE_MINTOMAX        = NO    // YES=start Image window in Min-to-Max mode
// AFNI_IMAGE_CLIPPED         = NO    // YES=start Image window in Clipped mode
// AFNI_IMAGE_CLIPBOT         = 0.25  // bottom level scaling for Clipped mode
// AFNI_IMAGE_CLIPTOP         = 1.0   // top level scaling for Clipped mode
// AFNI_IMAGE_GLOBALRANGE     = NO    // YES=scale Image grayleves in 3D
   AFNI_KEEP_PANNING          = YES   // keep Pan mode turned on in Image windows
// AFNI_IMAGE_LABEL_MODE      = 1     // draw labels in upper left of Image windows
// AFNI_IMAGE_LABEL_SIZE      = 2     // size of labels in Image windows
// AFNI_IMAGE_LABEL_COLOR     = white // color of labels in Image windows
// AFNI_IMAGE_LABEL_SETBACK   = 0.01  // distance from edges for labels
// AFNI_CROSSHAIR_LINES       = YES   // draw crosshairs with lines, not voxels
// AFNI_CROP_ZOOMSAVE         = NO    // how to save zoomed Image windows
// AFNI_IMAGE_ZEROCOLOR       = white // color to show for 0 voxels in Image window
// AFNI_IMAGE_ENTROPY         = 0.2   // image entropy at which to disable 2%-to-98%
// AFNI_IMAGE_ZOOM_NN         = NO    // YES==don't linearly interpolate zoomed images
// AFNI_IMAGE_SAVESQUARE      = NO    // YES==always save images with square pixels
// AFNI_IMAGE_TICK_DIV_IN_MM  = NO    // YES==image tick mark spacings are in mm
// AFNI_IMAGRA_CLOSER         = NO    // YES==Image/Graph button second clicks closes
   AFNI_DEFAULT_OPACITY       = 8     // default opacity level for Image windows
   AFNI_DEFAULT_IMSAVE        = jpg   // default Image window Save format
// AFNI_OLD_PPMTOBMP          = NO    // YES==color quantize BMP output images
   AFNI_VIDEO_DELAY           = 66    // ms between 'v' key image cycling
// AFNI_STROKE_THRESHOLD      = 8     // min mouse movement for grayscale edit
// AFNI_STROKE_AUTOPLOT       = YES   // YES=show grayscale histogram in edit
// AFNI_NO_SIDES_LABELS       = NO    // YES==AFNI won't show 'left=Left' labels

// AFNI_MINC_DATASETS       = YES  // try to read .mnc files as datasets
// AFNI_MINC_FLOATIZE       = YES  // convert .mnc files to floats on input
// AFNI_MINC_SLICESCALE     = YES  // scale each .mnc slice separately
// AFNI_ANALYZE_DATASETS    = YES  // read ANALYZE-7.5 files as datasets
// AFNI_ANALYZE_FLOATIZE    = YES  // convert ANALYZE data to floats on input
// AFNI_ANALYZE_SCALE       = YES  // use the 'funused1' value for scaling
// AFNI_ANALYZE_ORIGINATOR  = YES  // use the SPM ORIGINATOR field
// AFNI_ANALYZE_ORIENT      = LPI  // orientation for ANALYZE datasets
// AFNI_ANALYZE_AUTOCENTER  = NO   // make center of file have (x,y,z)=(0,0,0)?
// AFNI_MPEG_DATASETS       = NO   // YES==try to read .mpg files as datasets
// AFNI_MPEG_GRAYIZE        = NO   // YES==convert .mpg datasets to grayscale

// AFNI_START_SMALL         = NO   // set initial AFNI dataset to smallest one
   AFNI_DISP_SCROLLBARS     = YES  // YES==show scrollbars on Disp panel
// AFNI_VALUE_LABEL         = YES  // show data value label in Define Overlay

// AFNI_SUMA_LINECOLOR      = blue   // color for surface lines from SUMA
// AFNI_SUMA_LINESIZE       = 2      // thickness of lines from SUMA
// AFNI_SUMA_BOXSIZE        = 3      // size of node boxes from SUMA
// AFNI_SUMA_BOXCOLOR       = yellow // color for node boxes from SUMA
// AFNI_SHOW_SURF_POPUPS    = NO     // YES==see info windows from SUMA data transfers
// AFNI_KILL_SURF_POPUPS    = NO     // YES==don't see any info from SUMA data xfers

// AFNI_LOAD_PRINTSIZE      = 100M   // print warning that large file is being loaded
// AFNI_VERSION_CHECK       = YES    // NO==disable weekly version check over Web
// AFNI_MOTD_CHECK          = YES    // NO==disable display of Message-of-the-Day
// AFNI_AGIF_DELAY          = 10     // centi-seconds between animated GIF frames
// AFNI_MPEG_FRAMERATE      = 24     // MPEG-1 frame rate for saved movies

// AFNI_SLICE_SPACING_IS_GAP = NO   // YES==fix GE DICOM error
// AFNI_DICOM_RESCALE        = NO   // YES==use DICOM rescale tags
// AFNI_DICOM_WINDOW         = NO   // YES==use DICOM window tags

// AFNI_RESCAN_METHOD       = Add    // add new datasets, don't replace old ones
// AFNI_STARTUP_WARNINGS    = YES    // NO==turn off some warning message at startup
// AFNI_1D_TIME             = NO     // YES==.1D files columns are the time axis
// AFNI_1D_TIME_TR          = 1.0    // value for TR of a .1D time file
// AFNI_3D_BINARY           = YES    // YES==save .3D files in binary format
// AFNI_DRAW_UNDOSIZE       = 4      // # Mbytes for Draw Dataset undo buffer

// AFNI_DISABLE_CURSORS     = NO     // YES==don't try to change X11 cursors
// AFNI_CLICK_MESSAGE       = NO     // YES==see stupid 'click here to pop down' message
// AFNI_X11_REDECORATE      = YES    // NO==don't try to change X11 window controls
// AFNI_MAX_1DSIZE          = 66666  // max size of .1D files to automatically read
// AFNI_TITLE_LABEL2        = NO     // YES==use dataset 'label2' field in titlebar
// AFNI_EDGIZE_OVERLAY      = NO     // YES==show only edges of color overlay blobs
// AFNI_DONT_LOGFILE        = NO     // YES==don't log AFNI programs to ~/.afni.log
// AFNI_WRITE_NIML          = NO     // YES==write .HEAD files in NIML format
// AFNI_TTATLAS_CAUTION     = YES    // NO==disable warning message in 'wherami'
// AFNI_RESCAN_AT_SWITCH    = YES    // YES==rescan directory for new datasets
// AFNI_DATASET_BROWSE      = YES    // YES==dataset item selection acts immediately
// AFNI_OVERLAY_ONTOP       = YES    // YES==put 'Overlay' button above 'Underlay'

// AFNI_NIML_START          = YES         // start NIML listening when AFNI starts
// NIML_TRUSTHOST_01        = 192.168.0.1 // IP address of host to trust for NIML

   AFNI_plug_drawdset_butcolor = #992066  // For the Plugins menu.
// AFNI_plug_histog_butcolor   = #663199  // Colors are drawn from
   AFNI_plug_crender_butcolor  = #cc1033  // the RBGCYC map in afni.h

// AFNI_hotcolor               = navyblue // color for 'Done', 'Set', etc.

// AFNI_NO_NEGATIVES_WARNING  = NO   // YES==to3d won't warn about negative values
// AFNI_TO3D_ZPAD             = 0    // # of zero padding slices to add in to3d
// AFNI_TRY_DICOM_LAST        = NO   // YES==DICOM is last image format tried in to3d
// AFNI_ALLOW_MILLISECONDS    = NO   // YES==allow 'ms' time units in to3d

// AFNI_STARTUP_SCRIPT        = /home/rwcox/.afni_script // script to run at AFNI start

AFNI_ONE_OBLIQUE_WARNING      = YES // In AFNI interface, mention oblique warnings just once

AFNI_GRAPH_FORCE_AUTO_SCALE   = YES // Autoscale graphs each time they are redrawn