!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! How to set up AFNI defaults using X11: !! a) put lines like this in your .Xdefaults file in your home directory; !! b) edit to fit your needs !! c) log out and log back in (or use the command "xrdb -merge .Xdefaults") !! !! The values in this file are the values "hard-wired" into AFNI, and !! so you only need to put into the .Xdefaults file those values you !! wish to change. !! !! The resources up to and including AFNI*gamma also apply !! to the program TO3D -- all those after are specific to AFNI. !! font to use in most widgets AFNI*fontList: 9x15bold=charset1 !! background color in most widgets AFNI*background: gray40 AFNI*borderColor: gray40 !! background color in most popup and pulldown menu panes !! (this choice gives some contrast with the gray40 overall background) AFNI*menu*background: black !! foreground color in most widgets AFNI*foreground: yellow !! color in the "trough" of the slider controls (images and threshold) AFNI*troughColor: green !! color for quit and other "hot" buttons AFNI*hotcolor: red3 !! gray/color levels used for image display !! (overridden by the -ncol option) AFNI*ncolors: 100 !! correction for screen !! (overridden by the -gamma option) AFNI*gamma: 1.0 !! This option is actually only for TO3D; !! it specifies the initial value to put in the !! field-of-view widget (in mm). AFNI*init_fov: 240.0 !!**** !!**** Resources below here apply only to AFNI, not to TO3D !!**** !! auto-purge datasets from memory? (True or False) !! (overridden by the -purge option) AFNI*purge: False !! Whether to use the "big" Talairach box, which !! extends 10 mm more inferior than the AFNI 1.0x !! to accommodate the cerebellum. AFNI*tlrc_big: True !! Whether or not to use periodic montage layouts. AFNI*montage_periodic: True !! Use these to set the colors used in the BHelp popup !! AFNI*help*background: #ffffaa !! AFNI*help*foreground: black !! Set this to False to turn off the window manager !! borders on the BHelp popup AFNI*help*helpborder: True !! number of slices to scroll in image viewers when !! Shift key is pressed along with arrowpad button AFNI*bigscroll: 5 !! default resampling modes (from the set NN, Li, Cu, Bk) !! and voxel dimension (always cubical, in mm) AFNI*resam_anat: Li AFNI*resam_func: NN AFNI*resam_vox: 1.0 !! Whether to pop a list chooser down on double click or not !! "Set" means double click is the same as the Set button !! (and will pop the chooser down) !! "Apply" means double click is the same as the Apply button !! (and will keep the chooser up) !! AFNI*chooser_doubleclick: Set !! For scrolling list choosers (the "Switch" buttons), !! defines the max number of entries to display in !! a window before attaching scrollbars. !! (N.B.: if the number of entries to choose between !! is only a few more than this, then the !! window will be expanded and no scrollbars used.) AFNI*chooser_listmax: 10 !! Initial dimensions of graphing region, in pixels AFNI*graph_width: 512 AFNI*graph_height: 512 !! Initial number of points to ignore in graphs and FIMs !! (overridden by the -ignore option) AFNI*fim_ignore: 0 !! number of overlay colors to allocate: from 2 to 99 AFNI*ncolovr: 20 !! Definitions of colors (RGB or color database strings). !! Note that color number 0 means "none" and can't be redefined. !! These color indices (1 .. ncolovr) can be used in various places below. !! Note that if you just want to add new colors, you can !! a) set AFNI*ncolovr to a larger value !! b) supply "ovdef" and "ovlab" values for each new color index !! from 21 .. ncolovr AFNI*ovdef01: #ffff00 AFNI*ovdef02: #ffcc00 AFNI*ovdef03: #ff9900 AFNI*ovdef04: #ff6900 AFNI*ovdef05: #ff4400 AFNI*ovdef06: #ff0000 AFNI*ovdef07: #0000ff AFNI*ovdef08: #0044ff AFNI*ovdef09: #0069ff AFNI*ovdef10: #0099ff AFNI*ovdef11: #00ccff AFNI*ovdef12: #00ffff AFNI*ovdef13: green AFNI*ovdef14: limegreen AFNI*ovdef15: violet AFNI*ovdef16: hotpink AFNI*ovdef17: white AFNI*ovdef18: #dddddd AFNI*ovdef19: #bbbbbb AFNI*ovdef20: black !! Labels used for colors in "choosers" !! (only 1st 9 characters are used). AFNI*ovlab01: yellow AFNI*ovlab02: yell-oran AFNI*ovlab03: oran-yell AFNI*ovlab04: orange AFNI*ovlab05: oran-red AFNI*ovlab06: red AFNI*ovlab07: dk-blue AFNI*ovlab08: blue AFNI*ovlab09: lt-blue1 AFNI*ovlab10: lt-blue2 AFNI*ovlab11: blue-cyan AFNI*ovlab12: cyan AFNI*ovlab13: green AFNI*ovlab14: limegreen AFNI*ovlab15: violet AFNI*ovlab16: hotpink AFNI*ovlab17: white AFNI*ovlab18: gry-dd AFNI*ovlab19: gry-bb AFNI*ovlab20: black !! index of color used for crosshairs at startup AFNI*ovcrosshair: 13 !! color used for primary marker at startup AFNI*ovmarksprimary: 17 !! color used for secondary markers at startup AFNI*ovmarkssecondary: 14 !! pixel width for markers at startup AFNI*markssize: 8 !! pixel gap for markers at startup AFNI*marksgap: 3 !! pixel gap for crosshairs at startup AFNI*crosshairgap: 5 !! Used to set default colors for graph windows. !! The values are positive color indices, or !! can be -1 == brightest color in the overlay list !! -2 == darkest color !! -3 == reddest color !! -4 == greenest color !! -5 == bluest color !! boxes == Outlines drawn around each graph !! backg == Background !! grid == Uniformly spaced vertical lines in each graph !! text == Text (except for value under current time index) !! data == Data timeseries graph !! ideal == Ideal timeseries graph !! (also used to indicate the current time index) !! ort == Ort timeseries graph !! ignore == Used to indicate which points are ignored for FIM !! dplot == Double plot overlay color AFNI*graph_boxes_color: -2 AFNI*graph_backg_color: -1 AFNI*graph_grid_color: 1 AFNI*graph_text_color: -2 AFNI*graph_data_color: -2 AFNI*graph_ideal_color: -3 AFNI*graph_ort_color: -4 AFNI*graph_ignore_color: -5 AFNI*graph_dplot_color: -3 !! Used to set the whether certain types of !! lines in the graph windows are thick or !! not. Use 0 to indicate "thin" and use !! "1" to indicate "thick". AFNI*graph_boxes_thick: 0 AFNI*graph_grid_thick: 0 AFNI*graph_data_thick: 0 AFNI*graph_ideal_thick: 0 AFNI*graph_ort_thick: 0 AFNI*graph_dplot_thick: 0 !! Used to set the gap between sub-graphs AFNI*graph_ggap: 0 !! Used to set the font for drawing text into !! graph windows. The default font is chosen !! from a list "tfont_hopefuls" in the source file !! display.h. You can find out what fonts are !! available on your system by using the command !! "xlsfonts | more" AFNI*gfont: 7x14 !! Used to set the default fim polort order AFNI*fim_polort: 1 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !! font to use in pbar widgets AFNI*pbar*fontList: 7x13bold=charset1 !! A smaller font for pbar !!AFNI*pbar*fontList: 6x10=charset1 !! start pbar in positive mode (True or False) AFNI*pbar_posfunc: False !! hide process of changing pbar panes (True or False) AFNI*pbar_hide: False !! initial number of panes in the pbar (pos and sgn modes) AFNI*pbar_pos_pane_count: 8 AFNI*pbar_sgn_pane_count: 9 !! Set the color "pbar" initial thresholds and colors !! !! _pos --> positive only pbar (range from 1.0 to 0.0) !! _sgn --> signed pbar (range from 1.0 to -1.0) !! !! _panexx --> data for case with xx panes (from 02 to 10) !! !! _thryy --> yy'th threshold: 00 is top (always 1.0), !! 01 is next to top, up to yy = xx !! (always 0.0 for pos_, -1.0 for sgn_) !! !! _ovyy --> yy'th color index: 00 is top pane, up to yy = xx-1 !! !! The thr values must decrease monotonically with yy. !! The ov values must be color indices from the ovdef table !! (including color 0 --> no color). !! !! N.B.: If you supply values for a particular xx, you must !! supply ALL the values (_thr and _ov), or AFNI will !! ignore these values and use its built in defaults !! for that number of panes. AFNI*pbar_pos_pane02_thr00: 1.0 AFNI*pbar_pos_pane02_thr01: 0.5 AFNI*pbar_pos_pane02_thr02: 0.0 AFNI*pbar_pos_pane02_ov00: 1 AFNI*pbar_pos_pane02_ov01: 0 AFNI*pbar_pos_pane03_thr00: 1.0 AFNI*pbar_pos_pane03_thr01: 0.67 AFNI*pbar_pos_pane03_thr02: 0.33 AFNI*pbar_pos_pane03_thr03: 0.0 AFNI*pbar_pos_pane03_ov00: 1 AFNI*pbar_pos_pane03_ov01: 6 AFNI*pbar_pos_pane03_ov02: 0 AFNI*pbar_pos_pane04_thr00: 1.0 AFNI*pbar_pos_pane04_thr01: 0.75 AFNI*pbar_pos_pane04_thr02: 0.50 AFNI*pbar_pos_pane04_thr03: 0.25 AFNI*pbar_pos_pane04_thr04: 0.00 AFNI*pbar_pos_pane04_ov00: 1 AFNI*pbar_pos_pane04_ov01: 4 AFNI*pbar_pos_pane04_ov02: 6 AFNI*pbar_pos_pane04_ov03: 0 AFNI*pbar_pos_pane05_thr00: 1.0 AFNI*pbar_pos_pane05_thr01: 0.80 AFNI*pbar_pos_pane05_thr02: 0.60 AFNI*pbar_pos_pane05_thr03: 0.40 AFNI*pbar_pos_pane05_thr04: 0.20 AFNI*pbar_pos_pane05_thr05: 0.00 AFNI*pbar_pos_pane05_ov00: 1 AFNI*pbar_pos_pane05_ov01: 3 AFNI*pbar_pos_pane05_ov02: 5 AFNI*pbar_pos_pane05_ov03: 6 AFNI*pbar_pos_pane05_ov04: 0 AFNI*pbar_pos_pane06_thr00: 1.0 AFNI*pbar_pos_pane06_thr01: 0.84 AFNI*pbar_pos_pane06_thr02: 0.67 AFNI*pbar_pos_pane06_thr03: 0.50 AFNI*pbar_pos_pane06_thr04: 0.33 AFNI*pbar_pos_pane06_thr05: 0.16 AFNI*pbar_pos_pane06_thr06: 0.00 AFNI*pbar_pos_pane06_ov00: 1 AFNI*pbar_pos_pane06_ov01: 2 AFNI*pbar_pos_pane06_ov02: 3 AFNI*pbar_pos_pane06_ov03: 5 AFNI*pbar_pos_pane06_ov04: 6 AFNI*pbar_pos_pane06_ov05: 0 AFNI*pbar_pos_pane07_thr00: 1.0 AFNI*pbar_pos_pane07_thr01: 0.90 AFNI*pbar_pos_pane07_thr02: 0.75 AFNI*pbar_pos_pane07_thr03: 0.60 AFNI*pbar_pos_pane07_thr04: 0.45 AFNI*pbar_pos_pane07_thr05: 0.30 AFNI*pbar_pos_pane07_thr06: 0.15 AFNI*pbar_pos_pane07_thr07: 0.00 AFNI*pbar_pos_pane07_ov00: 1 AFNI*pbar_pos_pane07_ov01: 2 AFNI*pbar_pos_pane07_ov02: 3 AFNI*pbar_pos_pane07_ov03: 4 AFNI*pbar_pos_pane07_ov04: 5 AFNI*pbar_pos_pane07_ov05: 6 AFNI*pbar_pos_pane07_ov06: 0 AFNI*pbar_pos_pane08_thr00: 1.0 AFNI*pbar_pos_pane08_thr01: 0.80 AFNI*pbar_pos_pane08_thr02: 0.70 AFNI*pbar_pos_pane08_thr03: 0.60 AFNI*pbar_pos_pane08_thr04: 0.50 AFNI*pbar_pos_pane08_thr05: 0.40 AFNI*pbar_pos_pane08_thr06: 0.30 AFNI*pbar_pos_pane08_thr07: 0.15 AFNI*pbar_pos_pane08_thr08: 0.00 AFNI*pbar_pos_pane08_ov00: 1 AFNI*pbar_pos_pane08_ov01: 2 AFNI*pbar_pos_pane08_ov02: 3 AFNI*pbar_pos_pane08_ov03: 4 AFNI*pbar_pos_pane08_ov04: 5 AFNI*pbar_pos_pane08_ov05: 6 AFNI*pbar_pos_pane08_ov06: 16 AFNI*pbar_pos_pane08_ov07: 0 AFNI*pbar_pos_pane09_thr00: 1.0 AFNI*pbar_pos_pane09_thr01: 0.90 AFNI*pbar_pos_pane09_thr02: 0.80 AFNI*pbar_pos_pane09_thr03: 0.70 AFNI*pbar_pos_pane09_thr04: 0.60 AFNI*pbar_pos_pane09_thr05: 0.50 AFNI*pbar_pos_pane09_thr06: 0.25 AFNI*pbar_pos_pane09_thr07: 0.15 AFNI*pbar_pos_pane09_thr08: 0.05 AFNI*pbar_pos_pane09_thr09: 0.00 AFNI*pbar_pos_pane09_ov00: 1 AFNI*pbar_pos_pane09_ov01: 2 AFNI*pbar_pos_pane09_ov02: 3 AFNI*pbar_pos_pane09_ov03: 4 AFNI*pbar_pos_pane09_ov04: 5 AFNI*pbar_pos_pane09_ov05: 6 AFNI*pbar_pos_pane09_ov06: 16 AFNI*pbar_pos_pane09_ov07: 15 AFNI*pbar_pos_pane09_ov08: 0 AFNI*pbar_pos_pane10_thr00: 1.0 AFNI*pbar_pos_pane10_thr01: 0.90 AFNI*pbar_pos_pane10_thr02: 0.80 AFNI*pbar_pos_pane10_thr03: 0.70 AFNI*pbar_pos_pane10_thr04: 0.60 AFNI*pbar_pos_pane10_thr05: 0.50 AFNI*pbar_pos_pane10_thr06: 0.40 AFNI*pbar_pos_pane10_thr07: 0.30 AFNI*pbar_pos_pane10_thr08: 0.20 AFNI*pbar_pos_pane10_thr09: 0.10 AFNI*pbar_pos_pane10_thr10: 0.00 AFNI*pbar_pos_pane10_ov00: 1 AFNI*pbar_pos_pane10_ov01: 2 AFNI*pbar_pos_pane10_ov02: 3 AFNI*pbar_pos_pane10_ov03: 4 AFNI*pbar_pos_pane10_ov04: 5 AFNI*pbar_pos_pane10_ov05: 6 AFNI*pbar_pos_pane10_ov06: 16 AFNI*pbar_pos_pane10_ov07: 15 AFNI*pbar_pos_pane10_ov08: 7 AFNI*pbar_pos_pane10_ov09: 0 AFNI*pbar_sgn_pane02_thr00: 1.0 AFNI*pbar_sgn_pane02_thr01: 0.0 AFNI*pbar_sgn_pane02_thr02: -1.0 AFNI*pbar_sgn_pane02_ov00: 1 AFNI*pbar_sgn_pane02_ov01: 11 AFNI*pbar_sgn_pane03_thr00: 1.0 AFNI*pbar_sgn_pane03_thr01: 0.05 AFNI*pbar_sgn_pane03_thr02: -0.05 AFNI*pbar_sgn_pane03_thr03: -1.0 AFNI*pbar_sgn_pane03_ov00: 1 AFNI*pbar_sgn_pane03_ov01: 0 AFNI*pbar_sgn_pane03_ov02: 11 AFNI*pbar_sgn_pane04_thr00: 1.0 AFNI*pbar_sgn_pane04_thr01: 0.50 AFNI*pbar_sgn_pane04_thr02: 0.0 AFNI*pbar_sgn_pane04_thr03: -0.50 AFNI*pbar_sgn_pane04_thr04: -1.0 AFNI*pbar_sgn_pane04_ov00: 1 AFNI*pbar_sgn_pane04_ov01: 4 AFNI*pbar_sgn_pane04_ov02: 8 AFNI*pbar_sgn_pane04_ov03: 11 AFNI*pbar_sgn_pane05_thr00: 1.0 AFNI*pbar_sgn_pane05_thr01: 0.50 AFNI*pbar_sgn_pane05_thr02: 0.05 AFNI*pbar_sgn_pane05_thr03: -0.05 AFNI*pbar_sgn_pane05_thr04: -0.50 AFNI*pbar_sgn_pane05_thr05: -1.0 AFNI*pbar_sgn_pane05_ov00: 1 AFNI*pbar_sgn_pane05_ov01: 4 AFNI*pbar_sgn_pane05_ov02: 0 AFNI*pbar_sgn_pane05_ov03: 8 AFNI*pbar_sgn_pane05_ov04: 11 AFNI*pbar_sgn_pane06_thr00: 1.0 AFNI*pbar_sgn_pane06_thr01: 0.66 AFNI*pbar_sgn_pane06_thr02: 0.33 AFNI*pbar_sgn_pane06_thr03: 0.00 AFNI*pbar_sgn_pane06_thr04: -0.33 AFNI*pbar_sgn_pane06_thr05: -0.66 AFNI*pbar_sgn_pane06_thr06: -1.0 AFNI*pbar_sgn_pane06_ov00: 1 AFNI*pbar_sgn_pane06_ov01: 3 AFNI*pbar_sgn_pane06_ov02: 5 AFNI*pbar_sgn_pane06_ov03: 7 AFNI*pbar_sgn_pane06_ov04: 9 AFNI*pbar_sgn_pane06_ov05: 11 AFNI*pbar_sgn_pane07_thr00: 1.0 AFNI*pbar_sgn_pane07_thr01: 0.66 AFNI*pbar_sgn_pane07_thr02: 0.33 AFNI*pbar_sgn_pane07_thr03: 0.05 AFNI*pbar_sgn_pane07_thr04: -0.05 AFNI*pbar_sgn_pane07_thr05: -0.33 AFNI*pbar_sgn_pane07_thr06: -0.66 AFNI*pbar_sgn_pane07_thr07: -1.0 AFNI*pbar_sgn_pane07_ov00: 1 AFNI*pbar_sgn_pane07_ov01: 3 AFNI*pbar_sgn_pane07_ov02: 5 AFNI*pbar_sgn_pane07_ov03: 0 AFNI*pbar_sgn_pane07_ov04: 7 AFNI*pbar_sgn_pane07_ov05: 9 AFNI*pbar_sgn_pane07_ov06: 11 AFNI*pbar_sgn_pane08_thr00: 1.0 AFNI*pbar_sgn_pane08_thr01: 0.75 AFNI*pbar_sgn_pane08_thr02: 0.50 AFNI*pbar_sgn_pane08_thr03: 0.25 AFNI*pbar_sgn_pane08_thr04: 0.00 AFNI*pbar_sgn_pane08_thr05: -0.25 AFNI*pbar_sgn_pane08_thr06: -0.50 AFNI*pbar_sgn_pane08_thr07: -0.75 AFNI*pbar_sgn_pane08_thr08: -1.00 AFNI*pbar_sgn_pane08_ov00: 1 AFNI*pbar_sgn_pane08_ov01: 2 AFNI*pbar_sgn_pane08_ov02: 4 AFNI*pbar_sgn_pane08_ov03: 5 AFNI*pbar_sgn_pane08_ov04: 8 AFNI*pbar_sgn_pane08_ov05: 9 AFNI*pbar_sgn_pane08_ov06: 10 AFNI*pbar_sgn_pane08_ov07: 11 AFNI*pbar_sgn_pane09_thr00: 1.0 AFNI*pbar_sgn_pane09_thr01: 0.75 AFNI*pbar_sgn_pane09_thr02: 0.50 AFNI*pbar_sgn_pane09_thr03: 0.25 AFNI*pbar_sgn_pane09_thr04: 0.05 AFNI*pbar_sgn_pane09_thr05: -0.05 AFNI*pbar_sgn_pane09_thr06: -0.25 AFNI*pbar_sgn_pane09_thr07: -0.50 AFNI*pbar_sgn_pane09_thr08: -0.75 AFNI*pbar_sgn_pane09_thr09: -1.00 AFNI*pbar_sgn_pane09_ov00: 1 AFNI*pbar_sgn_pane09_ov01: 2 AFNI*pbar_sgn_pane09_ov02: 4 AFNI*pbar_sgn_pane09_ov03: 5 AFNI*pbar_sgn_pane09_ov04: 0 AFNI*pbar_sgn_pane09_ov05: 8 AFNI*pbar_sgn_pane09_ov06: 9 AFNI*pbar_sgn_pane09_ov07: 10 AFNI*pbar_sgn_pane09_ov08: 11 AFNI*pbar_sgn_pane10_thr00: 1.0 AFNI*pbar_sgn_pane10_thr01: 0.80 AFNI*pbar_sgn_pane10_thr02: 0.60 AFNI*pbar_sgn_pane10_thr03: 0.40 AFNI*pbar_sgn_pane10_thr04: 0.20 AFNI*pbar_sgn_pane10_thr05: 0.00 AFNI*pbar_sgn_pane10_thr06: -0.20 AFNI*pbar_sgn_pane10_thr07: -0.40 AFNI*pbar_sgn_pane10_thr08: -0.60 AFNI*pbar_sgn_pane10_thr09: -0.80 AFNI*pbar_sgn_pane10_thr10: -1.00 AFNI*pbar_sgn_pane10_ov00: 1 AFNI*pbar_sgn_pane10_ov01: 2 AFNI*pbar_sgn_pane10_ov02: 3 AFNI*pbar_sgn_pane10_ov03: 4 AFNI*pbar_sgn_pane10_ov04: 5 AFNI*pbar_sgn_pane10_ov05: 7 AFNI*pbar_sgn_pane10_ov06: 8 AFNI*pbar_sgn_pane10_ov07: 9 AFNI*pbar_sgn_pane10_ov08: 10 AFNI*pbar_sgn_pane10_ov09: 11 !! End of MCW AFNI X11 Resources !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!