One work around for getting AFNI to work without disabling SIP:

0. If you upgraded from Mac OS X 10.10 (or earlier), reinstall XQuartz.

1. Install XCode via Mac App Store: [itunes.apple.com]

2. Install Homebrew: Link below keeps getting garbled by board engine, see original website!

ruby -e "$(curl -fsSL [raw.githubusercontent.com])”

3. Setup PATH:

echo “export PATH=$PATH:~/abin” >> .bash_profile

4. Install GCC suite with Homebrew (no multilib necessary and it doesn't play nice with OpenMP anyway)

brew install gcc --with-all-languages --without-multilib

4b. Install pyqt for access to uber_subject.py and uber_ttest.py:

brew install pyqt

5. Link the libgomp library to the right place, because it didn’t for some reason:

ln -s /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/libgomp.1.dylib /usr/local/lib/libgomp.1.dylib

6. Install glib:

brew install glib

7. Test Setup:

afni_system_check.py -check_all

8. Rejoice.



Edited 1 time(s). Last edit at 12/08/2015 02:35PM by Peter Molfese.