One work around for getting AFNI to work without disabling SIP:
0. If you upgraded from Mac OS X 10.10 (or earlier), reinstall
XQuartz.
1. Install XCode via Mac App Store: [
itunes.apple.com]
2. Install
Homebrew: Link below keeps getting garbled by board engine, see original website!
ruby -e "$(curl -fsSL [raw.githubusercontent.com])”
3. Setup PATH:
echo “export PATH=$PATH:~/abin” >> .bash_profile
4. Install GCC suite with Homebrew (no multilib necessary and it doesn't play nice with OpenMP anyway)
brew install gcc --with-all-languages --without-multilib
4b. Install pyqt for access to uber_subject.py and uber_ttest.py:
brew install pyqt
5. Link the libgomp library to the right place, because it didn’t for some reason:
ln -s /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/libgomp.1.dylib /usr/local/lib/libgomp.1.dylib
6. Install glib:
brew install glib
7. Test Setup:
afni_system_check.py -check_all
8. Rejoice.
Edited 1 time(s). Last edit at 12/08/2015 02:35PM by Peter Molfese.