AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 26, 2016 03:21PM
Dear Rick,

I did not use "afni_proc.py". Following your groups' slide demonstration, I simply wrote and edited the 3dDeconlve script my self, something like below.

3dDeconvolve -input Emotion_S1_TR_shftNSI+tlrc.BRIK -mask Emotion_S1_BrainMask+tlrc. \
-polort A \
-float \
-nobout \
-num_stimts 6 \
-jobs 8 \
-concat '1D: 0 60 120 180 240 300' \
-stim_times 1 ./Onset1_Sub1/Control_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 1 Control1 \
-stim_times 2 ./Onset1_Sub1/Anxiety_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 2 Anxiety1 \
-stim_times 3 ./Onset1_Sub1/Shock_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 3 Shock_Cond1 \
-stim_times 4 ./Onset2_Sub1/Control_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 4 Control2 \
-stim_times 5 ./Onset2_Sub1/Anxiety_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 5 Anxiety2 \
-stim_times 6 ./Onset2_Sub1/Shock_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 6 Shock_Cond2 \
-cbucket ./Emotion_S1_shftNSI_ShapeNOTfixed_betas" \
-x1D ./"Emotion_S1_shftNSI_ShapeNOTfixed.x1D" \
-xsave \
-xjpeg ./"Emotion_S1_shftNSI_ShapeNOTfixed.png" \
-tout -bucket ./"Emotion_S1_shftNSI_ShapeNOTfixed"

I never got any alarm with my script running. Any ideas to find that potential warning? How can I get the file "out.cormat_warn.txt"? How to generate @ss_review_driver?

Thanks,
J
Subject Author Posted

any suggestion on my 3dDeconvolve

Juan January 24, 2016 09:09PM

Re: any suggestion on my 3dDeconvolve

rick reynolds January 25, 2016 03:59PM

Re: any suggestion on my 3dDeconvolve

Juan January 26, 2016 03:21PM

Re: any suggestion on my 3dDeconvolve

rick reynolds January 28, 2016 01:18PM