AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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zreagh
January 28, 2016 02:23PM
Hi,

I am presently optimizing a version of the afni_proc.py call for use in my lab. I have a quick question regarding template space.

In a nutshell, I am wondering if it is possible to run through the entire pipeline retaining the original subject's space (all steps, including alignment and regression) rather than Talairach space. Apologies if I missed this in the documentation, but I don't believe I was able to find anything amounting to a flag or option that straightforwardly achieves this outcome.

Thanks so much,
-Zach Reagh
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Subject Author Posted

Quick question about template space in afni_proc.py

zreagh January 28, 2016 02:23PM

Re: Quick question about template space in afni_proc.py

rick reynolds January 28, 2016 03:42PM

Re: Quick question about template space in afni_proc.py

zreagh January 28, 2016 06:24PM

Re: Quick question about template space in afni_proc.py

rick reynolds January 28, 2016 08:39PM