AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 28, 2016 08:39PM
Hi Zach,

Precisely? No. There is nothing in afni_proc.py to produce
stats in orig space as if there had never been a jump to
standard space (not without changing a couple of options
and re-running the analysis, say).

But if you are not *that* picky, and just want to view the
results in orig space, then there is nothing extra to do.
Just view the stats as Overlay and set the orig space anat
as the Underlay. The afni GUI should automatically invert
the warp and transform the stats back to orig space.

Note though, unless the subjects are bolted down in the
scanner, they will usually rotate a bit out of plane during
scanning, especially in the nodding direction. At that
point, preserving the original grid gains almost nothing.
Even simple motion correction with 3dvolreg requires as
much interpolation as the transformation to standard
space.

Something to ponder...

- rick
Subject Author Posted

Quick question about template space in afni_proc.py

zreagh January 28, 2016 02:23PM

Re: Quick question about template space in afni_proc.py

rick reynolds January 28, 2016 03:42PM

Re: Quick question about template space in afni_proc.py

zreagh January 28, 2016 06:24PM

Re: Quick question about template space in afni_proc.py

rick reynolds January 28, 2016 08:39PM