afni.nimh.nih.gov
AFNI Message Board
Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| February 10, 2016 07:39AM | |
Hi Bob,
I copy all datasets to a local directory, but this did not solve the problem. I can still see the A_GRP_ICORR+tlrc volume but it is all zero.
Any other suggestion?
This is the output of 3dGroupInCorr
[ccaballero@cajal02 GroupInCorr]$ 3dGroupInCorr -setA FOGp.grpincorr.niml -setB FOGm.grpincorr.niml -verb -sendall
++ 3dGroupInCorr: AFNI version=AFNI_16.0.01 (Jan 27 2016) [64-bit]
++ Authored by: Cox, the Mad Correlator
++ GIC: data file FOGp.grpincorr.data found with 200,059,584 bytes of data
++ GIC: -setA opened, contains 17 datasets, 39948 time series, 200,059,584 bytes
++ GIC: data file FOGm.grpincorr.data found with 307,999,080 bytes of data
++ GIC: -setB opened, contains 26 datasets, 39948 time series, 307,999,080 bytes
++ GIC: page faulting (reading) data into memory
+ setA:0123456789.0123456789.0123456789.0123456789.0123456789.!
+ setB:0123456789.0123456789.0123456789.0123456789.0123456789.!
++ GIC: total bytes input = 508,058,664 (about 508 million [mega])
++ GIC: --- Be sure to start AFNI with the '-niml' command line option
+ --- [or press the NIML+PO button if you forgot '-niml']
++ Opening NIML socket 'tcp:localhost:53213' to AFNI............ Connected!
++ GIC: Sending setup information to AFNI
++ 3dGroupInCorr stands ready to do thy bidding, O Master
!!
+ GIC: OpenMP thread count = 12
Thanks very much,
Cesar
I copy all datasets to a local directory, but this did not solve the problem. I can still see the A_GRP_ICORR+tlrc volume but it is all zero.
Any other suggestion?
This is the output of 3dGroupInCorr
[ccaballero@cajal02 GroupInCorr]$ 3dGroupInCorr -setA FOGp.grpincorr.niml -setB FOGm.grpincorr.niml -verb -sendall
++ 3dGroupInCorr: AFNI version=AFNI_16.0.01 (Jan 27 2016) [64-bit]
++ Authored by: Cox, the Mad Correlator
++ GIC: data file FOGp.grpincorr.data found with 200,059,584 bytes of data
++ GIC: -setA opened, contains 17 datasets, 39948 time series, 200,059,584 bytes
++ GIC: data file FOGm.grpincorr.data found with 307,999,080 bytes of data
++ GIC: -setB opened, contains 26 datasets, 39948 time series, 307,999,080 bytes
++ GIC: page faulting (reading) data into memory
+ setA:0123456789.0123456789.0123456789.0123456789.0123456789.!
+ setB:0123456789.0123456789.0123456789.0123456789.0123456789.!
++ GIC: total bytes input = 508,058,664 (about 508 million [mega])
++ GIC: --- Be sure to start AFNI with the '-niml' command line option
+ --- [or press the NIML+PO button if you forgot '-niml']
++ Opening NIML socket 'tcp:localhost:53213' to AFNI............ Connected!
++ GIC: Sending setup information to AFNI
++ 3dGroupInCorr stands ready to do thy bidding, O Master
!!
+ GIC: OpenMP thread count = 12
Thanks very much,
Cesar
