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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| July 20, 2016 01:44PM | |
I'm not using -resid. Here's an example of an exact command I run:
3dttest++ -setA 'Positive>Word' \ sub0 '/Volumes/NLine_Peter/Sizes/s2003/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub1 '/Volumes/NLine_Peter/Sizes/s2004/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub2 '/Volumes/NLine_Peter/Sizes/s2005/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub3 '/Volumes/NLine_Peter/Sizes/s2006/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub4 '/Volumes/NLine_Peter/Sizes/s2007/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub5 '/Volumes/NLine_Peter/Sizes/s2011/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub6 '/Volumes/NLine_Peter/Sizes/s2012/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub7 '/Volumes/NLine_Peter/Sizes/s2014/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub8 '/Volumes/NLine_Peter/Sizes/s2015/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub9 '/Volumes/NLine_Peter/Sizes/s2016/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub10 '/Volumes/NLine_Peter/Sizes/s2017/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub11 '/Volumes/NLine_Peter/Sizes/s2018/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub12 '/Volumes/NLine_Peter/Sizes/s2019/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub13 '/Volumes/NLine_Peter/Sizes/s2021/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub14 '/Volumes/NLine_Peter/Sizes/s2022/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub15 '/Volumes/NLine_Peter/Sizes/s2023/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub16 '/Volumes/NLine_Peter/Sizes/s2024/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ sub17 '/Volumes/NLine_Peter/Sizes/s2027/rh.std.141.TaskContrast.4fwhm.niml.dset[1]' \ -prefix rh.std.141.temp1.niml.dset -Clustsimand the output:
++ 3dttest++: AFNI version=AFNI_16.2.02 (Jul 19 2016) [64-bit] ++ Authored by: Zhark++ ++ Number of -clustsim threads set to 16 ++ no mask ==> processing all 198812 voxels ++ loading input datasets ++ t-testing:0123456789.0123456789.0123456789.0123456789.0123456789.! ++ ---------- End of analyses -- freeing workspaces ---------- ++ Creating FDR curves in output dataset ++ Smallest FDR q [1 Positive>Wor_Zscr] = 0.00181232 + Added 1 FDR curve to dataset ++ Output dataset ./rh.std.141.temp1.niml.dset ++ Output dataset ./TT.z9WstU9Zw8p.resid.nii ++ ================ Starting -clustsim calculations ================ + ===== temporary files will have prefix TT.z9WstU9Zw8p ===== + ===== running 16 -randomsign jobs (626 iterations per job) ===== + #0 jobs command: 3dttest++ -DAFNI_AUTOMATIC_FDR=NO -DAFNI_DONT_LOGFILE=YES -randomsign 626 -nomeans -toz -setA TT.z9WstU9Zw8p.resid.nii -prefix TT.z9WstU9Zw8p.000.nii ++ 3dttest++: AFNI version=AFNI_16.2.02 (Jul 19 2016) [64-bit] ++ Authored by: Zhark++ ** nifti_header_version: bad sizeof_hdr = 1094459427 ** nifti_image_read: bad nifti im header version -1 *+ WARNING: -setA: group label 'TT.z9WstU9Zw8p.resid.nii' looks like a dataset name but isn't -- is this OK ?!? ** FATAL ERROR: Option -setA (long form): need at least 2 datasets ** Program compile date = Jul 19 2016 + ===== jobs have finished (10.08 s elapsed) ===== + ===== starting 3dClustSim ===== 3dClustSim -DAFNI_DONT_LOGFILE=YES -inset TT.z9WstU9Zw8p.???.nii -prefix TT.z9WstU9Zw8p.CSim -LOTS -both -cmd TT.z9WstU9Zw8p.CSim.cmd ++ 3dClustSim: AFNI version=AFNI_16.2.02 (Jul 19 2016) [64-bit] ++ Authored by: RW Cox and BD Ward ** ERROR: -inset 'TT.z9WstU9Zw8p.???.nii': failure to open dataset ** FATAL ERROR: no valid datasets opened after -inset** Program compile date = Jul 19 2016 ** FATAL ERROR: ===== 3dClustSim command failed
| Subject | Author | Posted |
|---|---|---|
|
pdeming | March 17, 2016 05:36PM |
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Bob Cox | March 17, 2016 07:51PM |
|
pdeming | March 23, 2016 05:33PM |
|
PeterKohler | July 19, 2016 06:27PM |
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Bob Cox | July 20, 2016 08:56AM |
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PeterKohler | July 20, 2016 01:44PM |
|
gang | July 20, 2016 05:03PM |
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PeterKohler | July 20, 2016 05:59PM |
|
gang | July 20, 2016 06:04PM |
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PeterKohler | July 20, 2016 06:06PM |
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Ruy | August 08, 2016 03:51PM |
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Bob Cox | July 21, 2016 08:35AM |
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PeterKohler | July 21, 2016 04:27PM |
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jkeidel | July 25, 2016 06:33AM |
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jkeidel | July 25, 2016 06:41AM |
|
gang | July 25, 2016 10:04AM |
|
jkeidel | July 25, 2016 11:22AM |
|
Bob Cox | August 09, 2016 09:13AM |
