AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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AjaySK
April 23, 2016 06:16PM
Hi Afni Experts,
I am using 3dMVM and running into an error where none of my inputs are being loaded. The inputs I want to run the analysis on are my thickness files. I tried using .gii'[0]' and .dset'[0]' as inputs but unsuccessfully. None of the inputs are loading and I am not sure if it is due to the files being thickness or some other issue. I did make sure -dataTable was the last parameter and that I removed the \ from the last line...Any suggestions?

Below is a snippet of the command:

3dMVM -prefix Lthickness -jobs 12 \
-bsVars "Group+Age+Gender+Education" \
-qVars "Age,Education" \
-num_glf 1 \
-glfLabel 1 group_Lthickness -glfCode 1 'Group : 1*HC -1*PAT1 & 1*HC -1*PAT2 & 1*PAT1 -1*PAT2' \
-num_glt 3 \
-gltLabel 1 HCvsPD -gltCode 1 'Group : 1*HC -1*PAT1' \
-gltLabel 2 HCvsMCI -gltCode 2 'Group : 1*HC -1*PAT2' \
-gltLabel 3 PDvsMCI -gltCode 3 'Group : 1*PAT1 -1*PAT2' \
-dataTable \
Subj Group Age Gender Education InputFile \
HC_1 HC 70 Female 13 ./HC/Lthickness15/HC_1.lh.thickness.fwhm15.fsaverage.gii'[0]' \
HC_2 HC 63 Female 16 ./HC/Lthickness15/HC_2.lh.thickness.fwhm15.fsaverage.gii'[0]' \
.
.
.
PAT1_13 HC 64 Female 21 ./PAT1/Lthickness15/PAT1_13.lh.thickness.fwhm15.fsaverage.gii'[0]'


No images are loaded:
** ERROR: Dset ./PAT1/Lthickness15/PAT1_1.lh.thickness.fwhm15.fsaverage.gii[0] could not be loaded
** ERROR: Dset ./PAT1/Lthickness15/PAT1_13.lh.thickness.fwhm15.fsaverage.dset[0] could not be loaded
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Subject Author Posted

3dMVM .gii thickness error...can't load files

AjaySK April 23, 2016 06:16PM

Re: 3dMVM .gii thickness error...can't load files

AjaySK April 24, 2016 08:59AM

Re: 3dMVM .gii thickness error...can't load files

gang April 25, 2016 09:02PM

Re: 3dMVM .gii thickness error...can't load files

AjaySK April 26, 2016 08:32AM

Re: 3dMVM .gii thickness error...can't load files

gang April 26, 2016 11:09AM