AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Alain
April 29, 2016 01:01AM
Hi Daniel,

Many thanks for the suggestions. I'm still a bit confused by how to approach this problem. The SSS ROI I was provided with occurs in a different space than the native space for my subject. It is not an ROI from an atlas. It fits on the right area of the template image they provided me with. But how do I transform that ROI so it fits on the right area of each subject's anatomical? The 3dNwarpApply command seems to require a specific transformation file for the -nwarp option. How do I create this file, which is needed to correctly specify the transformation that needs to be applied?

Alain
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Subject Author Posted

Converting an ROI into native space

Alain April 27, 2016 02:23PM

Re: Converting an ROI into native space

Daniel Glen April 27, 2016 03:11PM

Re: Converting an ROI into native space

Alain April 29, 2016 01:01AM

Re: Converting an ROI into native space

Daniel Glen April 29, 2016 08:23AM

Re: Converting an ROI into native space

Alain May 01, 2016 09:13PM

Re: Converting an ROI into native space

Daniel Glen May 02, 2016 01:01PM

Re: Converting an ROI into native space

Alain May 15, 2016 02:34PM

Re: Converting an ROI into native space

Daniel Glen May 16, 2016 06:27PM