AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 17, 2016 12:53PM
See you tomorrow!

OS is 10.11.6

Here is the output:
afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.6.0
version: Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64
distribution: 10.11.6 x86_64
number of CPUs: 4
apparent login shell: bash
shell RC file: .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /Users/kajajasinka/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: May 11 2016
AFNI_version.txt : AFNI_16.1.15, macosx_10.7_Intel_64, May 11 2016
which python : /usr/local/bin/python
python version : 2.7.5
which R : /usr/local/bin/R
R version : R version 3.3.0 (2016-05-03) -- "Supposedly Educational"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/kajajasinka/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.3/Resources/bin/R)
python : 2
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
/usr/bin/python

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : FAILURE
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/kajajasinka/abin/3dAllineate
Reason: image not found
3dRSFC : success
SurfMesh : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/local/lib/python2.7/site-packages/PyQt4
++ module loaded: PyQt4

-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/local/fsl/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/kajajasinka/abin

PYTHONPATH = /usr/local/lib/python2.7/site-packages

R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under ./

------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 0.9.9 (git revision 2f20; last commit 2016-05-15)


============================ summary comments ============================
* login shell 'bash', trusting user to translate from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .profile
* AFNI programs show FAILURE
* insufficient data for AFNI bootcamp
Subject Author Posted

xquartz error after el capitan update

kajakinga May 16, 2016 03:15PM

Re: xquartz error after el capitan update

Daniel Glen May 16, 2016 03:37PM

Re: xquartz error after el capitan update

kajakinga June 21, 2016 01:08PM

Re: xquartz error after el capitan update

ptaylor June 21, 2016 01:54PM

Re: xquartz error after el capitan update

rick reynolds June 21, 2016 02:54PM

Re: xquartz error after el capitan update

Daniel Glen June 21, 2016 04:54PM

Re: xquartz error after el capitan update

kajakinga August 17, 2016 10:45AM

Re: xquartz error after el capitan update

Peter Molfese August 17, 2016 11:05AM

Re: xquartz error after el capitan update

kajakinga August 17, 2016 11:27AM

Re: xquartz error after el capitan update

Peter Molfese August 17, 2016 12:00PM

Re: xquartz error after el capitan update

kajakinga August 17, 2016 12:53PM

Re: xquartz error after el capitan update

kajakinga August 23, 2016 10:30AM

Re: xquartz error after el capitan update

Daniel Glen August 24, 2016 03:43PM