See you tomorrow!
OS is 10.11.6
Here is the output:
afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.6.0
version: Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64
distribution: 10.11.6 x86_64
number of CPUs: 4
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /Users/kajajasinka/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: May 11 2016
AFNI_version.txt : AFNI_16.1.15, macosx_10.7_Intel_64, May 11 2016
which python : /usr/local/bin/python
python version : 2.7.5
which R : /usr/local/bin/R
R version : R version 3.3.0 (2016-05-03) -- "Supposedly Educational"
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/Users/kajajasinka/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.3/Resources/bin/R)
python : 2
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
/usr/bin/python
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : FAILURE
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/kajajasinka/abin/3dAllineate
Reason: image not found
3dRSFC : success
SurfMesh : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/local/lib/python2.7/site-packages/PyQt4
++ module loaded: PyQt4
-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/local/fsl/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/kajajasinka/abin
PYTHONPATH = /usr/local/lib/python2.7/site-packages
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under ./
------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 0.9.9 (git revision 2f20; last commit 2016-05-15)
============================ summary comments ============================
* login shell 'bash', trusting user to translate from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .profile
* AFNI programs show FAILURE
* insufficient data for AFNI bootcamp