AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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gang
July 15, 2016 03:01PM
Once you set up your clusterization parameters, click the button "Rpt" on the AFNI GUI. On the the popup window, choose the original dataset (input for 3dDeconvolve) as well as your fitted dataset (output from 3dDeconvolve) as auxiliary datasets (click the white triangle button on the popup window). Then click the Plot button for each cluster in the cluster table, and you will get the plots.

However, this won't plot one against the other. For that, you can use 3dmaskave with each ROI (cluster) as a mask, and obtain the averaged time series. Then plot them out with 1dplot, for example.

Gang
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Subject Author Posted

Assessing model fit beyond voxel level in AFNI

Alain July 14, 2016 10:59PM

Re: Assessing model fit beyond voxel level in AFNI

gang July 15, 2016 09:59AM

Re: Assessing model fit beyond voxel level in AFNI

Alain July 15, 2016 10:14AM

Re: Assessing model fit beyond voxel level in AFNI

gang July 15, 2016 03:01PM

Re: Assessing model fit beyond voxel level in AFNI

Alain July 17, 2016 11:04PM

Re: Assessing model fit beyond voxel level in AFNI

gang July 18, 2016 04:29PM