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Dear AFNI users-

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Sincerely, AFNI HQ

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bfair
August 16, 2016 01:06PM
Hi,

I am trying to run a 3dLME script (simple ANOVA) with my variable for comparison being 'latent class.' I keep getting the following error:

Error in `[.data.frame`(lop$dataStr, , jj) : undefined columns selected
Calls: process.LME.opts -> [ -> [.data.frame
Execution halted

My script is as follows:

3dLME -prefix test -jobs 1 \
-model "latent_class+bl_completed_timestamp+Sex_best+Phil_IMP_PDS+IMP_handedness+Site_1+Site_2+site_3+site_4+site_5+site_6+site_7+IMP_IQ_PR+IMP_IQ_VC+IMP_Phil_totalGMV.14" \
-qVars "bl_completed_timestamp,Phil_IMP_PDS,IMP_IQ_PR,IMP_IQ_VC,IMP_Phil_totalGMV.14" \
-ranEff ’~1’ \
-SS_type 3 \
-dataTable \
Subj bl_completed_timestamp Sex_best Phil_IMP_PDS IMP_handedness Site_1 Site_2 site_3 site_4 site_5 site_6 site_7 IMP_IQ_PR IMP_IQ_VC IMP_Phil_totalGMV.14 latent_class InputFile \
000000022453 5351 0 2.2 1 0 0 0 0 0 0 0 114 116 769991 1 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000022453.nii \
000000075717 5350 0 3 1 0 1 0 0 0 0 0 100 109 791158 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000075717.nii \
000000106601 5060 0 2.4 0 0 0 0 0 0 0 1 125 105 772073 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000106601.nii \
000000106871 5608 1 2.8 1 0 0 0 0 0 0 0 110 99 729178 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000106871.nii \
000000112288 5258 0 2.4 1 0 0 0 0 0 0 1 112 99 720459 4 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000112288.nii \
000000240546 5285 0 2.8 1 0 0 0 1 0 0 0 131 140 808224 1 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000240546.nii \
000000297685 5275 1 3.8 1 0 1 0 0 0 0 0 104 87 697298 1 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000297685.nii \
000000308867 5172 0 2.8 1 0 1 0 0 0 0 0 92 105 743821 2 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000308867.nii \
000000397377 5299 1 2.6 1 0 0 0 1 0 0 0 104 115 580802 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000397377.nii \
000000458976 5194 1 3 0 0 0 0 0 0 0 0 116 116 706129 4 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000458976.nii \
000000459848 5255 1 2.2 1 0 0 0 0 0 0 1 119 93 717422 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000459848.nii \
000000469693 5249 1 3.2 1 0 0 0 0 1 0 0 112 117 571626 4 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000469693.nii \
000000540905 5251 1 2 1 0 0 0 1 0 0 0 119 142 684633 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000540905.nii \
000000602062 5166 0 3 1 0 0 0 0 0 0 1 92 109 791640 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000602062.nii \
000000613223 5345 0 2.6 1 0 0 0 0 0 0 0 125 109 852181 2 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000613223.nii \
000000642263 5503 1 2.6 1 0 0 0 0 0 1 0 104 117 718236 2 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000642263.nii \
000000663084 5450 1 2.6 0 0 0 1 0 0 0 0 125 124 661362 4 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000663084.nii \
000000724314 5128 0 2.6 1 0 0 0 0 0 0 1 117 124 744396 3 /Volumes/Backup_2/Test_Folder/s888mwc1mprage000000724314.nii

Any ideas on how to fix this issue?
~BFair
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Subject Author Posted

3dLME script error data.frame: undefined columns selected

bfair August 16, 2016 01:06PM

Re: 3dLME script error data.frame: undefined columns selected

gang August 16, 2016 04:00PM

Re: 3dLME script error data.frame: undefined columns selected

bfair August 18, 2016 11:59AM

Re: 3dLME script error data.frame: undefined columns selected

gang August 18, 2016 02:28PM

Re: 3dLME script error data.frame: undefined columns selected

bfair August 19, 2016 10:01AM