AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 21, 2018 03:24PM
Hello, I am new to AFNI and am trying to test whether pre- to post-treatment change in anxiety is correlated with change in seed-based resting state connectivity pre- to post-treatment. I set up the following model, but when I try to run it I get the following error "Incorrect level coding in variable session : T2"

Any help would be much appreciated!!



3dLME -prefix Anxiety1 -jobs 1 \
-model "Session*Anxiety" \
-qVars "Anxiety" \
-qVarCenters "31.40" \
-ranEff '~1+Anxiety' \
-SS_type 3 \
-num_glt 3 \
-gltLabel 1 'T1' -gltCode 1 'Session : -1*T1' \
-gltLabel 2 'T2' -gltCode 2 'Session : 1*T2' \
-gltLabel 3 'T1-Anxiety' -gltCode 3 'Session : -1*T1 Anxiety :' \
-num_glf 1 \
-glfLabel 1 'Session_Anxiety' -glfCode 1 'Session : -1*T1 1*T2 Anxiety :' \
-dataTable \
Subj Session Anxiety InputFile \
04027 T1 45 /Applications/freesurfer/Study1/subs/04027_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04034 T1 31 /Applications/freesurfer/Study1/subs/04034_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04035 T1 40 /Applications/freesurfer/Study1/subs/04035_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04040 T1 28 /Applications/freesurfer/Study1/subs/04040_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04041 T1 18 /Applications/freesurfer/Study1/subs/04041_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04043 T1 26 /Applications/freesurfer/Study1/subs/04043_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04054 T1 32 /Applications/freesurfer/Study1/subs/04054_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04056 T1 23 /Applications/freesurfer/Study1/subs/04056_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04057 T1 41 /Applications/freesurfer/Study1/subs/04057_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04059 T1 29 /Applications/freesurfer/Study1/subs/04059_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04060 T1 32 /Applications/freesurfer/Study1/subs/04060_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04065 T1 32 /Applications/freesurfer/Study1/subs/04065_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04070 T1 30 /Applications/freesurfer/Study1/subs/04070_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04071 T1 28 /Applications/freesurfer/Study1/subs/04071_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04072 T1 38 /Applications/freesurfer/Study1/subs/04072_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04073 T1 31 /Applications/freesurfer/Study1/subs/04073_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04074 T1 29 /Applications/freesurfer/Study1/subs/04074_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04076 T1 42 /Applications/freesurfer/Study1/subs/04076_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04079 T1 30 /Applications/freesurfer/Study1/subs/04079_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04080 T1 27 /Applications/freesurfer/Study1/subs/04080_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04082 T1 28 /Applications/freesurfer/Study1/subs/04082_pre/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T1#0_Coef]' \
04020 T2 18 /Applications/freesurfer/Study1/subs/04020_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04027 T2 15 /Applications/freesurfer/Study1/subs/04027_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04034 T2 33 /Applications/freesurfer/Study1/subs/04034_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04035 T2 11 /Applications/freesurfer/Study1/subs/04035_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04040 T2 20 /Applications/freesurfer/Study1/subs/04040_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04041 T2 35 /Applications/freesurfer/Study1/subs/04041_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04043 T2 28 /Applications/freesurfer/Study1/subs/04043_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04054 T2 50 /Applications/freesurfer/Study1/subs/04054_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04056 T2 25 /Applications/freesurfer/Study1/subs/04056_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04057 T2 22 /Applications/freesurfer/Study1/subs/04057_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04059 T2 23 /Applications/freesurfer/Study1/subs/04059_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04060 T2 19 /Applications/freesurfer/Study1/subs/04060_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04065 T2 19 /Applications/freesurfer/Study1/subs/04065_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04070 T2 33 /Applications/freesurfer/Study1/subs/04070_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04071 T2 11 /Applications/freesurfer/Study1/subs/04071_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04072 T2 17 /Applications/freesurfer/Study1/subs/04072_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04073 T2 21 /Applications/freesurfer/Study1/subs/04073_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04074 T2 31 /Applications/freesurfer/Study1/subs/04074_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04076 T2 39 /Applications/freesurfer/Study1/subs/04076_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04079 T2 20 /Applications/freesurfer/Study1/subs/04079_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04080 T2 24 /Applications/freesurfer/Study1/subs/04080_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
04082 T2 17 /Applications/freesurfer/Study1/subs/04082_post/aScript_results/PCC_seed.maskConnData.Z.nii.gz'[T2#0_Coef]' \
Subject Author Posted

3dLME for pre-post intervention design

AFNIbeginner February 21, 2018 03:24PM

Re: 3dLME for pre-post intervention design

gang February 21, 2018 05:56PM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 21, 2018 06:52PM

Re: 3dLME for pre-post intervention design

gang February 22, 2018 11:51AM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 22, 2018 03:21PM

Re: 3dLME for pre-post intervention design

gang February 22, 2018 03:50PM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 27, 2018 03:07PM

Re: 3dLME for pre-post intervention design

gang February 28, 2018 03:32PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 01, 2018 03:48PM

Re: 3dLME for pre-post intervention design

gang March 02, 2018 09:07AM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 05, 2018 01:24PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 07, 2018 02:16PM

Re: 3dLME for pre-post intervention design

gang March 08, 2018 01:18PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 12, 2018 08:05PM

Re: 3dLME for pre-post intervention design

gang March 13, 2018 05:39PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 14, 2018 12:08PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 06, 2018 12:18PM

Re: 3dLME for pre-post intervention design

gang April 06, 2018 04:17PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 06, 2018 06:30PM

Re: 3dLME for pre-post intervention design

gang April 09, 2018 09:36AM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 09, 2018 01:17PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 14, 2018 08:48AM

Re: 3dLME for pre-post intervention design

gang April 16, 2018 09:57AM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 16, 2018 12:00PM

Re: 3dLME for pre-post intervention design

gang April 16, 2018 03:39PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 16, 2018 04:21PM