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August 22, 2016 01:06PM
Hello AFNI Experts,

I have been doing some quality checks on the skull stripping and alignment after afni proc py #11 resting state example. We are finding that skull stripping leaves some bits of skull and some bits of the parietal lobe get cut off. The alignment between epi and anatomy look reasonable.

We have tried making some adjustments within 3dSkull strip such as - push_to_edge and -ld 30, as well as @NoisySkullStrip. That did not seem to improve things.

I have attached some pics. Do you think this is still acceptable? It seems that when looking at the original anat, this may be the best we can do.


Thanks,

Emily
[attachment 153 agspr1.jpg]
[attachment 154 agspr2.jpg]


Subject Author Posted

Skull Stripping Attachments

Emily August 22, 2016 01:06PM

Re: Skull Stripping

Peter Molfese August 22, 2016 02:44PM

Re: Skull Stripping

rick reynolds August 23, 2016 10:04AM



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