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Zhihao_Li
August 29, 2016 09:07PM
Hi Gang,
I want to run a group analysis with 1 between subject factor: GROUP (Main, Control), and 2 with subject factors: TASK (Video, Language), VISIT (1st, 2nd, 3rd). There are missing data for some within-subject factors.
I was trying the following "3dMVM" and "3dLME" commands but got similar error information that I don't understand. Could you please help? Thank you very much!

------------------------------------------------------------------------------------------
3dMVM -prefix ./GroupLevelAnova -jobs 10 \
-mask ./BrainMask.nii.gz \
-bsVars 'GROUP' \
-wsVars 'TASK*VISIT' \
-wsE2 \
-num_glf 6 \
-glfLabel 1 Main_Video_Training -glfCode 1 'GROUP : 1*Main TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 2 Main_Language_Training -glfCode 2 'GROUP : 1*Main TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 3 Control_Video_Training -glfCode 3 'GROUP : 1*Control TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 4 Control_Language_Training -glfCode 4 'GROUP : 1*Control TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 5 Main-Control_Video_Training -glfCode 5 'GROUP : 1*Main -1*Contol TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 6 Main-Control_Language_Training -glfCode 6 'GROUP : 1*Main -1*Control TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-num_glt 18 \
-gltLabel 1 Main_Video_1st -gltCode 1 'GROUP : 1*Main TASK : 1*Video VISIT : 1*1st' \
-gltLabel 2 Main_Video 2nd -gltCode 2 'GROUP : 1*Main TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 3 Main_Video 3rd -gltCode 3 'GROUP : 1*Main TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 4 Main_Language_1st -gltCode 4 'GROUP : 1*Main TASK : 1*Language VISIT : 1*1st' \
-gltLabel 5 Main_Language 2nd -gltCode 5 'GROUP : 1*Main TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 6 Main_Language 3rd -gltCode 6 'GROUP : 1*Main TASK : 1*Language VISIT : 1*3rd' \
-gltLabel 7 Control_Video_1st -gltCode 7 'GROUP : 1*Control TASK : 1*Video VISIT : 1*1st' \
-gltLabel 8 Control_Video_2nd -gltCode 8 'GROUP : 1*Control TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 9 Control_Video_3rd -gltCode 9 'GROUP : 1*Control TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 10 Control_Language_1st -gltCode 10 'GROUP : 1*Control TASK : 1*Language VISIT : 1*1st' \
-gltLabel 11 Control_Language_2nd -gltCode 11 'GROUP : 1*Control TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 12 Control_Language_3rd -gltCode 12 'GROUP : 1*Control TASK : 1*Language VISIT : 1*3rd' \
-gltLabel 13 Main-Control_Video_1st -gltCode 13 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*1st' \
-gltLabel 14 Main-Control_Video_2nd -gltCode 14 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 15 Main-Control_Video_3rd -gltCode 15 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 16 Main-Control_Language_1st -gltCode 16 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*1st' \
-gltLabel 17 Main-Control_Language_2nd -gltCode 17 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 18 Main-Control_Language_3rd -gltCode 18 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*3rd' \
-dataTable \
Subj GROUP TASK VISIT InputFile \
....

Error in seq.default(2, length(sepTerms), 2) :
wrong sign in 'by' argument
Calls: process.MVM.opts -> gl_Constr -> glfConstr -> seq -> seq.default
Execution halted
--------------------------------------------------------------------------------------



--------------------------------------------------------------------------------------
3dLME -prefix ./GroupLevelAnova -jobs 10 \
-mask ./BrainMask.nii.gz \
-model 'GROUP*TASK*VISIT' \
-ranEff '~1' \
-SS_type 3 \
-num_glf 6 \
-glfLabel 1 Main_Video_Training -glfCode 1 'GROUP : 1*Main TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 2 Main_Language_Training -glfCode 2 'GROUP : 1*Main TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 3 Control_Video_Training -glfCode 3 'GROUP : 1*Control TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 4 Control_Language_Training -glfCode 4 'GROUP : 1*Control TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 5 Main-Control_Video_Training -glfCode 5 'GROUP : 1*Main -1*Contol TASK : Video VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-glfLabel 6 Main-Control_Language_Training -glfCode 6 'GROUP : 1*Main -1*Control TASK : Language VISIT : 1*2nd -1*1st & 1*3rd -1*1st' \
-num_glt 18 \
-gltLabel 1 Main_Video_1st -gltCode 1 'GROUP : 1*Main TASK : 1*Video VISIT : 1*1st' \
-gltLabel 2 Main_Video 2nd -gltCode 2 'GROUP : 1*Main TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 3 Main_Video 3rd -gltCode 3 'GROUP : 1*Main TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 4 Main_Language_1st -gltCode 4 'GROUP : 1*Main TASK : 1*Language VISIT : 1*1st' \
-gltLabel 5 Main_Language 2nd -gltCode 5 'GROUP : 1*Main TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 6 Main_Language 3rd -gltCode 6 'GROUP : 1*Main TASK : 1*Language VISIT : 1*3rd' \
-gltLabel 7 Control_Video_1st -gltCode 7 'GROUP : 1*Control TASK : 1*Video VISIT : 1*1st' \
-gltLabel 8 Control_Video_2nd -gltCode 8 'GROUP : 1*Control TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 9 Control_Video_3rd -gltCode 9 'GROUP : 1*Control TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 10 Control_Language_1st -gltCode 10 'GROUP : 1*Control TASK : 1*Language VISIT : 1*1st' \
-gltLabel 11 Control_Language_2nd -gltCode 11 'GROUP : 1*Control TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 12 Control_Language_3rd -gltCode 12 'GROUP : 1*Control TASK : 1*Language VISIT : 1*3rd' \
-gltLabel 13 Main-Control_Video_1st -gltCode 13 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*1st' \
-gltLabel 14 Main-Control_Video_2nd -gltCode 14 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*2nd' \
-gltLabel 15 Main-Control_Video_3rd -gltCode 15 'GROUP : 1*Main -1*Control TASK : 1*Video VISIT : 1*3rd' \
-gltLabel 16 Main-Control_Language_1st -gltCode 16 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*1st' \
-gltLabel 17 Main-Control_Language_2nd -gltCode 17 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*2nd' \
-gltLabel 18 Main-Control_Language_3rd -gltCode 18 'GROUP : 1*Main -1*Control TASK : 1*Language VISIT : 1*3rd' \
-dataTable \
Subj GROUP TASK VISIT InputFile \
...

Error in seq.default(2, length(sepTerms), 2) :
wrong sign in 'by' argument
Calls: process.LME.opts -> gl_Constr -> glfConstr -> seq -> seq.default
Execution halted
-----------------------------------------------------------------------------------------------------
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Subject Author Posted

3dMVM/3dLME error

Zhihao_Li August 29, 2016 09:07PM

Re: 3dMVM/3dLME error

gang August 30, 2016 01:16PM

Re: 3dMVM/3dLME error

Zhihao_Li August 30, 2016 03:06PM

Re: 3dMVM/3dLME error

gang August 30, 2016 04:31PM