Hi BFair,
What shell are you using, and is the script really
specific to that shell? It is possible that you
could try with with either bash or tcsh, if it is
generic, and maybe the other would work.
Alternatively, IF all of the datasets can be listed
with a single wildcard, even if there are 2 groups
and 2 wildcard listings, and IF you are not using
covariates (in which case, the subject IDs are not
needed in the command), the datasets could be listed
on the command line with quoted wildcards, as in:
3dttest++ -setA '/PATH_TO_DATA/spmstatsintra/*/SessionB/EPI_short_MID/swea/con_0010.nii' \
-setB '/PATH_TO_DATA/spmstatsintra/*/SessionC/EPI_short_MID/swea/con_0010.nii' \
...
Is that an option?
- rick