Hi there,
Bumping this thread. I've been trying to do the same thing (use both -multi_cost and -AddEdge options for -align_epi_anat.py), and I've been running into the same problems. It seems like the two arguments are incompatible, so I have to pick one over the other, and I haven't been as successful with running @AddEdge by alone. Has there been any progress made on integrating these arguments so they can both play nice with afni_proc.py?
Best,
Debbie