AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 21, 2016 04:03PM
Hi Emily,

That notion of interleaved should refer to how the actual
slices are stored in the mosaic. If the EPI volumes look
correct when viewed in afni, then that -sinter option should
not be a worry.

Given that the volumes are now stored correctly on disk,
the alt+z only affects how they are processed during a
3dTshift operation, say, to deal with timing of individual
slices.

Note that you should have the option to use Dimon, e.g.

Dimon -gert_create_dataset -infile_prefix /Volumes/HaleDepo/STRESSSPGRREST_150816/${subject}/REST2/M

From there you could consider options like -dicom_org
and -save_details, if you wanted to.

- rick
Subject Author Posted

to 3d

Emily September 21, 2016 08:45AM

Re: to 3d

rick reynolds September 21, 2016 04:03PM

Re: to 3d

Emily September 22, 2016 09:34AM

Re: to 3d

rick reynolds September 23, 2016 08:56AM

Re: to 3d

Emily September 26, 2016 08:58AM

Re: to 3d

rick reynolds September 26, 2016 09:34AM

Re: to 3d

Emily September 26, 2016 07:48PM

Re: to 3d

rick reynolds September 27, 2016 01:14PM

Re: to 3d

Emily October 09, 2016 02:35PM

Re: to 3d

rick reynolds October 09, 2016 09:36PM

Re: to 3d

Emily October 13, 2016 03:45PM

Re: to 3d

rick reynolds October 13, 2016 03:57PM