AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 26, 2016 10:48PM
Hi-

The Fisher Z transform can be calculated in terms of a Pearson r as either:
Z = 0.5*log((1+r)/(1-r))
or
Z = atanh(r),
where the latter is the inverse of the hyperbolic tangent function. They *should* both give similar results up to a large number of decimal places even for a high correlation.

Agreed, I don't see where the \sqrt() factor would come into play.

In terms of your specific question, your Z = 1.62 corresponds to a Pearson correlation of:
r = np.tanh(1.6) = 0.92167,
which *is* pretty high. If you are taking an average time series from a region of interest, your expected correlation with any time series within even that region would depend a lot on the size of the region and its homogeneity/noise. It would be good to doublecheck the calculation but it might not be beyond the realm of possibility to get the value you are seeing.

--pt
Subject Author Posted

Fisher transform

Leo September 26, 2016 05:54PM

Re: Fisher transform

ptaylor September 26, 2016 10:48PM

Re: Fisher transform

Leo September 27, 2016 12:42PM

Re: Fisher transform

ptaylor September 27, 2016 01:08PM

Re: Fisher transform

Leo September 27, 2016 02:30PM

Re: Fisher transform

Leo September 28, 2016 05:17PM

Re: Fisher transform

gang September 28, 2016 05:34PM

Re: Fisher transform

Leo September 29, 2016 11:39AM

Re: Fisher transform

gang September 29, 2016 04:22PM

Re: Fisher transform

Leo September 29, 2016 05:35PM

Re: Fisher transform

gang September 30, 2016 01:31PM

Re: Fisher transform

Emmanuelle Renauld January 31, 2017 10:50AM

Re: Fisher transform

gang January 31, 2017 11:59AM

Re: Fisher transform

Emmanuelle Renauld January 31, 2017 03:53PM

Re: Fisher transform

gang February 01, 2017 11:19AM