AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 13, 2016 12:41PM
There seem to be 2 issues then. One is that the
sform_code/qform_code values are 2 (which has become
ambiguous because of improper usage). To treat those
as orig space, set AFNI_NIFTI_VIEW to orig (in your
.afnirc file, or perhaps the shell).

Also, if the TR is 1.0 s for some reason (i.e. it is
incorrect), fix it before proceeding.

What does "3dinfo 4D_TE1.nii" show, for example?
Does it show "Time step = 1.00000s"?

If so, just fix it: 3drefit -TR 2 4D_TE1.nii .

- rick
Subject Author Posted

MEICA: fails on 3dTshift for -tpattern @filename

JeffAnderson October 12, 2016 02:09PM

Re: MEICA: fails on 3dTshift for -tpattern @filename

rick reynolds October 13, 2016 12:41PM

Re: MEICA: fails on 3dTshift for -tpattern @filename

JeffAnderson October 24, 2016 04:23PM