AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 27, 2016 09:15AM
Hi Robin,

Pass them to afni_proc.py.

1. Remove the first $num_rm_TRs time points to begin with, and
make a separate file for each such regressor, e.g.

1dcat rvhr_regs.1D"[0]{$num_rm_TRs..$end}" > sfile_1_bla.1D
1dcat rvhr_regs.1D"[1]{$num_rm_TRs..$end}" > sfile_2_blabla.1D

2. Pass those files along with the others via -regress_stim_times, e.g.

-regress_stim_files timing*.1D sfile_[12]_bla*.1D


3. Include -regress_stim_types, where timing files are specified
as 'times' and the new simple regressors are as 'file', e.g.

-regress_stim_types times times times ... times file file


See Example 7 from the -help output, as well as the description
of the -regress_stim_types option.


To be clear, parameters of the following options should match
one for one:

-regress_stim_times
-regress_stim_labels
-regress_stim_types

Does that seem reasonable? Please feel free to send me your
proc script via email for verification.

- rick
Subject Author Posted

Add non-stim-times regressors to afni_proc.py? (Task-RVHRCOR)

Robin October 27, 2016 04:15AM

Re: Add non-stim-times regressors to afni_proc.py? (Task-RVHRCOR)

rick reynolds October 27, 2016 09:15AM