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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| July 06, 2018 09:25AM | |
Registered: 6 years ago Posts: 8 |
Dear AFNI experts,
I take the liberty of writing you regarding some trouble I'm encountering with my 3dttest++ script. I would like to perform a 3dttest++ to investigate the effect of self-reported variables (quantitative measures evaluated with self-reported questionnaires) on functional connectivity among healthy subjects for one specific ROI.
Currently I'm getting an error message that says the following:
/data1/YAIROD/resting_state/results/23subjects> tcsh -xef 3dttest.22subjects_NAcc_withCov.WithCentering2.csh
set findir = /data1/YAIROD/resting_state/results/23subjects
set groupMask = /data1/YAIROD/resting_state/results/23subjects/groupMask
3dttest++ -prefix /data1/YAIROD/resting_state/results/23subjects/3dttest.22subjects_NAcc_withCov.WithCentering -DAFNI_DEBUG_TABLE=YES -mask /data1/YAIROD/resting_state/results/23subjects/groupMask/final_groupMask_23subjs+tlrc. -covariates /data1/YAIROD/resting_state/results/23subjects/3dttest.NAcc.22subjects.covariates.txt -center DIFF -setA /data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH808/DH808.results.withFS/seed_connectivity_maps/zMapDH808LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH809/DH809.results.withFS/seed_connectivity_maps/zMapDH809LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH810/DH810.results.withFS/seed_connectivity_maps/zMapDH810LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH811/DH811.results.withFS/seed_connectivity_maps/zMapDH811LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH813/DH813.results.withFS/seed_connectivity_maps/zMapDH813LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH814/DH814.results.withFS/seed_connectivity_maps/zMapDH814LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH815/DH815.results.withFS/seed_connectivity_maps/zMapDH815LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH819/DH819.results.withFS/seed_connectivity_maps/zMapDH819LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH823/DH823.results.withFS/seed_connectivity_maps/zMapDH823LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH828/DH828.results.withFS/seed_connectivity_maps/zMapDH828LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH833/DH833.results.withFS/seed_connectivity_maps/zMapDH833LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH834/DH834.results.withFS/seed_connectivity_maps/zMapDH834LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH835/DH835.results.withFS/seed_connectivity_maps/zMapDH835LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH836/DH836.results.withFS/seed_connectivity_maps/zMapDH836LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH837/DH837.results.withFS/seed_connectivity_maps/zMapDH837LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH839/DH839.results.withFS/seed_connectivity_maps/zMapDH839LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH841/DH841.results.withFS/seed_connectivity_maps/zMapDH841LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH844/DH844.results.withFS/seed_connectivity_maps/zMapDH844LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH846/DH846.results.withFS/seed_connectivity_maps/zMapDH846LR_NAcc+tlrc.HEAD
++ 3dttest++: AFNI version=AFNI_18.1.24 (Jun 3 2018) [64-bit]
++ Authored by: Zhark++
++ 70622 voxels in -mask dataset
++ Mixed Table: processing file /data1/YAIROD/resting_state/results/23subjects/3dttest.NAcc.22subjects.covariates.txt
+ first line = 'subj BDI CERQnonAdaptER CERQrum'
+ found 4 labels in first line
+ processing row #0 = 'zMapDH803LR_NAcc 4 11 15'
+ deciding format of 3 columns
+ -- col#1 is numeric
+ -- col#2 is numeric
+ -- col#3 is numeric
+ processing row #1 = 'zMapDH804LR_NAcc 1 6.5 9'
+ processing row #2 = 'zMapDH807LR_NAcc 2 7 11'
+ processing row #3 = 'zMapDH808LR_NAcc 6 6.75 14'
+ processing row #4 = 'zMapDH809LR_NAcc 9 11.5 15'
+ processing row #5 = 'zMapDH810LR_NAcc 0 5 4'
+ processing row #6 = 'zMapDH811LR_NAcc 7 7.5 9'
+ processing row #7 = 'zMapDH813LR_NAcc 1 6.25 8'
+ processing row #8 = 'zMapDH814LR_NAcc 1 10.75 14'
+ processing row #9 = 'zMapDH815LR_NAcc 19 11 15'
+ processing row #10 = 'zMapDH819LR_NAcc 2 10.25 12'
+ processing row #11 = 'zMapDH823LR_NAcc 1 9 11'
+ processing row #12 = 'zMapDH828LR_NAcc 7 8.25 8'
+ processing row #13 = 'zMapDH833LR_NAcc 5 5.5 8'
+ processing row #14 = 'zMapDH834LR_NAcc 5 11 17'
+ processing row #15 = 'zMapDH835LR_NAcc 5 10 13'
+ processing row #16 = 'zMapDH836LR_NAcc 4 7 7'
+ processing row #17 = 'zMapDH837LR_NAcc 16 6.75 10'
+ processing row #18 = 'zMapDH839LR_NAcc 7 9 18'
+ processing row #19 = 'zMapDH841LR_NAcc 1 6.25 10'
+ processing row #20 = 'zMapDH844LR_NAcc 1 8.75 10'
+ processing row #21 = 'zMapDH846LR_NAcc 1 10.5 14'
+ checking for duplicate labels
+ Table element follows::
<AFNI_table
ni_type="String,3*float"
ni_dimen="22"
Labels="subj;BDI;CERQnonAdaptER;CERQrum" >
"zMapDH803LR_NAcc" 4 11 15
"zMapDH804LR_NAcc" 1 6.5 9
"zMapDH807LR_NAcc" 2 7 11
"zMapDH808LR_NAcc" 6 6.75 14
"zMapDH809LR_NAcc" 9 11.5 15
"zMapDH810LR_NAcc" 0 5 4
"zMapDH811LR_NAcc" 7 7.5 9
"zMapDH813LR_NAcc" 1 6.25 8
"zMapDH814LR_NAcc" 1 10.75 14
"zMapDH815LR_NAcc" 19 11 15
"zMapDH819LR_NAcc" 2 10.25 12
"zMapDH823LR_NAcc" 1 9 11
"zMapDH828LR_NAcc" 7 8.25 8
"zMapDH833LR_NAcc" 5 5.5 8
"zMapDH834LR_NAcc" 5 11 17
"zMapDH835LR_NAcc" 5 10 13
"zMapDH836LR_NAcc" 4 7 7
"zMapDH837LR_NAcc" 16 6.75 10
"zMapDH839LR_NAcc" 7 9 18
"zMapDH841LR_NAcc" 1 6.25 10
"zMapDH844LR_NAcc" 1 8.75 10
"zMapDH846LR_NAcc" 1 10.5 14
</AFNI_table>
++ Covariates file: 4 columns, each with 22 rows
+ Covariate column labels: subj;BDI;CERQnonAdaptER;CERQrum
+ Found 3 numeric columns: BDI CERQnonAdaptER CERQrum
++ option -setA :: processing as LONG form (label label dset label dset ...)
*+ WARNING: -setA: LONG form group label '/data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc.HEAD' looks like a dataset name but isn't -- is this OK ?!?
*+ WARNING: -setA: LONG form dataset label '/data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc.HEAD' looks like a dataset name -- is this OK ?!?
** FATAL ERROR: Option -setA: can't open dataset '/data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc.HEAD'
Please find below my 3dttest++ script as well as my covariates' file:
# set data directories and file names
set findir = /data1/YAIROD/resting_state/results/23subjects
set groupMask = /data1/YAIROD/resting_state/results/23subjects/groupMask
3dttest++ \
-prefix $findir/3dttest.22subjects_NAcc_withCov.WithCentering \
-DAFNI_DEBUG_TABLE=YES \
-mask $groupMask/final_groupMask_23subjs+tlrc. \
-covariates $findir/3dttest.NAcc.22subjects.covariates.txt \
-center DIFF \
-setA \
/data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH808/DH808.results.withFS/seed_connectivity_maps/zMapDH808LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH809/DH809.results.withFS/seed_connectivity_maps/zMapDH809LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH810/DH810.results.withFS/seed_connectivity_maps/zMapDH810LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH811/DH811.results.withFS/seed_connectivity_maps/zMapDH811LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH813/DH813.results.withFS/seed_connectivity_maps/zMapDH813LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH814/DH814.results.withFS/seed_connectivity_maps/zMapDH814LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH815/DH815.results.withFS/seed_connectivity_maps/zMapDH815LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH819/DH819.results.withFS/seed_connectivity_maps/zMapDH819LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH823/DH823.results.withFS/seed_connectivity_maps/zMapDH823LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH828/DH828.results.withFS/seed_connectivity_maps/zMapDH828LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH833/DH833.results.withFS/seed_connectivity_maps/zMapDH833LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH834/DH834.results.withFS/seed_connectivity_maps/zMapDH834LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH835/DH835.results.withFS/seed_connectivity_maps/zMapDH835LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH836/DH836.results.withFS/seed_connectivity_maps/zMapDH836LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH837/DH837.results.withFS/seed_connectivity_maps/zMapDH837LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH839/DH839.results.withFS/seed_connectivity_maps/zMapDH839LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH841/DH841.results.withFS/seed_connectivity_maps/zMapDH841LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH844/DH844.results.withFS/seed_connectivity_maps/zMapDH844LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH846/DH846.results.withFS/seed_connectivity_maps/zMapDH846LR_NAcc+tlrc'[0]'
Covariates' file:
subj BDI CERQnonAdaptER CERQrum
zMapDH803LR_NAcc 4 11 15
zMapDH804LR_NAcc 1 6.5 9
zMapDH807LR_NAcc 2 7 11
zMapDH808LR_NAcc 6 6.75 14
zMapDH809LR_NAcc 9 11.5 15
zMapDH810LR_NAcc 0 5 4
zMapDH811LR_NAcc 7 7.5 9
zMapDH813LR_NAcc 1 6.25 8
zMapDH814LR_NAcc 1 10.75 14
zMapDH815LR_NAcc 19 11 15
zMapDH819LR_NAcc 2 10.25 12
zMapDH823LR_NAcc 1 9 11
zMapDH828LR_NAcc 7 8.25 8
zMapDH833LR_NAcc 5 5.5 8
zMapDH834LR_NAcc 5 11 17
zMapDH835LR_NAcc 5 10 13
zMapDH836LR_NAcc 4 7 7
zMapDH837LR_NAcc 16 6.75 10
zMapDH839LR_NAcc 7 9 18
zMapDH841LR_NAcc 1 6.25 10
zMapDH844LR_NAcc 1 8.75 10
zMapDH846LR_NAcc 1 10.5 14
So far I tried to change the label of the subj variable without any success.
Many thanks a lot for your kind attention and help !
Claudie
Claudie
I take the liberty of writing you regarding some trouble I'm encountering with my 3dttest++ script. I would like to perform a 3dttest++ to investigate the effect of self-reported variables (quantitative measures evaluated with self-reported questionnaires) on functional connectivity among healthy subjects for one specific ROI.
Currently I'm getting an error message that says the following:
/data1/YAIROD/resting_state/results/23subjects> tcsh -xef 3dttest.22subjects_NAcc_withCov.WithCentering2.csh
set findir = /data1/YAIROD/resting_state/results/23subjects
set groupMask = /data1/YAIROD/resting_state/results/23subjects/groupMask
3dttest++ -prefix /data1/YAIROD/resting_state/results/23subjects/3dttest.22subjects_NAcc_withCov.WithCentering -DAFNI_DEBUG_TABLE=YES -mask /data1/YAIROD/resting_state/results/23subjects/groupMask/final_groupMask_23subjs+tlrc. -covariates /data1/YAIROD/resting_state/results/23subjects/3dttest.NAcc.22subjects.covariates.txt -center DIFF -setA /data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH808/DH808.results.withFS/seed_connectivity_maps/zMapDH808LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH809/DH809.results.withFS/seed_connectivity_maps/zMapDH809LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH810/DH810.results.withFS/seed_connectivity_maps/zMapDH810LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH811/DH811.results.withFS/seed_connectivity_maps/zMapDH811LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH813/DH813.results.withFS/seed_connectivity_maps/zMapDH813LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH814/DH814.results.withFS/seed_connectivity_maps/zMapDH814LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH815/DH815.results.withFS/seed_connectivity_maps/zMapDH815LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH819/DH819.results.withFS/seed_connectivity_maps/zMapDH819LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH823/DH823.results.withFS/seed_connectivity_maps/zMapDH823LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH828/DH828.results.withFS/seed_connectivity_maps/zMapDH828LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH833/DH833.results.withFS/seed_connectivity_maps/zMapDH833LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH834/DH834.results.withFS/seed_connectivity_maps/zMapDH834LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH835/DH835.results.withFS/seed_connectivity_maps/zMapDH835LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH836/DH836.results.withFS/seed_connectivity_maps/zMapDH836LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH837/DH837.results.withFS/seed_connectivity_maps/zMapDH837LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH839/DH839.results.withFS/seed_connectivity_maps/zMapDH839LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH841/DH841.results.withFS/seed_connectivity_maps/zMapDH841LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH844/DH844.results.withFS/seed_connectivity_maps/zMapDH844LR_NAcc+tlrc.HEAD /data1/YAIROD/resting_state/subjects/DH846/DH846.results.withFS/seed_connectivity_maps/zMapDH846LR_NAcc+tlrc.HEAD
++ 3dttest++: AFNI version=AFNI_18.1.24 (Jun 3 2018) [64-bit]
++ Authored by: Zhark++
++ 70622 voxels in -mask dataset
++ Mixed Table: processing file /data1/YAIROD/resting_state/results/23subjects/3dttest.NAcc.22subjects.covariates.txt
+ first line = 'subj BDI CERQnonAdaptER CERQrum'
+ found 4 labels in first line
+ processing row #0 = 'zMapDH803LR_NAcc 4 11 15'
+ deciding format of 3 columns
+ -- col#1 is numeric
+ -- col#2 is numeric
+ -- col#3 is numeric
+ processing row #1 = 'zMapDH804LR_NAcc 1 6.5 9'
+ processing row #2 = 'zMapDH807LR_NAcc 2 7 11'
+ processing row #3 = 'zMapDH808LR_NAcc 6 6.75 14'
+ processing row #4 = 'zMapDH809LR_NAcc 9 11.5 15'
+ processing row #5 = 'zMapDH810LR_NAcc 0 5 4'
+ processing row #6 = 'zMapDH811LR_NAcc 7 7.5 9'
+ processing row #7 = 'zMapDH813LR_NAcc 1 6.25 8'
+ processing row #8 = 'zMapDH814LR_NAcc 1 10.75 14'
+ processing row #9 = 'zMapDH815LR_NAcc 19 11 15'
+ processing row #10 = 'zMapDH819LR_NAcc 2 10.25 12'
+ processing row #11 = 'zMapDH823LR_NAcc 1 9 11'
+ processing row #12 = 'zMapDH828LR_NAcc 7 8.25 8'
+ processing row #13 = 'zMapDH833LR_NAcc 5 5.5 8'
+ processing row #14 = 'zMapDH834LR_NAcc 5 11 17'
+ processing row #15 = 'zMapDH835LR_NAcc 5 10 13'
+ processing row #16 = 'zMapDH836LR_NAcc 4 7 7'
+ processing row #17 = 'zMapDH837LR_NAcc 16 6.75 10'
+ processing row #18 = 'zMapDH839LR_NAcc 7 9 18'
+ processing row #19 = 'zMapDH841LR_NAcc 1 6.25 10'
+ processing row #20 = 'zMapDH844LR_NAcc 1 8.75 10'
+ processing row #21 = 'zMapDH846LR_NAcc 1 10.5 14'
+ checking for duplicate labels
+ Table element follows::
<AFNI_table
ni_type="String,3*float"
ni_dimen="22"
Labels="subj;BDI;CERQnonAdaptER;CERQrum" >
"zMapDH803LR_NAcc" 4 11 15
"zMapDH804LR_NAcc" 1 6.5 9
"zMapDH807LR_NAcc" 2 7 11
"zMapDH808LR_NAcc" 6 6.75 14
"zMapDH809LR_NAcc" 9 11.5 15
"zMapDH810LR_NAcc" 0 5 4
"zMapDH811LR_NAcc" 7 7.5 9
"zMapDH813LR_NAcc" 1 6.25 8
"zMapDH814LR_NAcc" 1 10.75 14
"zMapDH815LR_NAcc" 19 11 15
"zMapDH819LR_NAcc" 2 10.25 12
"zMapDH823LR_NAcc" 1 9 11
"zMapDH828LR_NAcc" 7 8.25 8
"zMapDH833LR_NAcc" 5 5.5 8
"zMapDH834LR_NAcc" 5 11 17
"zMapDH835LR_NAcc" 5 10 13
"zMapDH836LR_NAcc" 4 7 7
"zMapDH837LR_NAcc" 16 6.75 10
"zMapDH839LR_NAcc" 7 9 18
"zMapDH841LR_NAcc" 1 6.25 10
"zMapDH844LR_NAcc" 1 8.75 10
"zMapDH846LR_NAcc" 1 10.5 14
</AFNI_table>
++ Covariates file: 4 columns, each with 22 rows
+ Covariate column labels: subj;BDI;CERQnonAdaptER;CERQrum
+ Found 3 numeric columns: BDI CERQnonAdaptER CERQrum
++ option -setA :: processing as LONG form (label label dset label dset ...)
*+ WARNING: -setA: LONG form group label '/data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc.HEAD' looks like a dataset name but isn't -- is this OK ?!?
*+ WARNING: -setA: LONG form dataset label '/data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc.HEAD' looks like a dataset name -- is this OK ?!?
** FATAL ERROR: Option -setA: can't open dataset '/data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc.HEAD'
Please find below my 3dttest++ script as well as my covariates' file:
# set data directories and file names
set findir = /data1/YAIROD/resting_state/results/23subjects
set groupMask = /data1/YAIROD/resting_state/results/23subjects/groupMask
3dttest++ \
-prefix $findir/3dttest.22subjects_NAcc_withCov.WithCentering \
-DAFNI_DEBUG_TABLE=YES \
-mask $groupMask/final_groupMask_23subjs+tlrc. \
-covariates $findir/3dttest.NAcc.22subjects.covariates.txt \
-center DIFF \
-setA \
/data1/YAIROD/resting_state/subjects/DH803/DH803.results.withFS/seed_connectivity_maps/zMapDH803LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH804/DH804.results.withFS/seed_connectivity_maps/zMapDH804LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH807/DH807.results.withFS/seed_connectivity_maps/zMapDH807LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH808/DH808.results.withFS/seed_connectivity_maps/zMapDH808LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH809/DH809.results.withFS/seed_connectivity_maps/zMapDH809LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH810/DH810.results.withFS/seed_connectivity_maps/zMapDH810LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH811/DH811.results.withFS/seed_connectivity_maps/zMapDH811LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH813/DH813.results.withFS/seed_connectivity_maps/zMapDH813LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH814/DH814.results.withFS/seed_connectivity_maps/zMapDH814LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH815/DH815.results.withFS/seed_connectivity_maps/zMapDH815LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH819/DH819.results.withFS/seed_connectivity_maps/zMapDH819LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH823/DH823.results.withFS/seed_connectivity_maps/zMapDH823LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH828/DH828.results.withFS/seed_connectivity_maps/zMapDH828LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH833/DH833.results.withFS/seed_connectivity_maps/zMapDH833LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH834/DH834.results.withFS/seed_connectivity_maps/zMapDH834LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH835/DH835.results.withFS/seed_connectivity_maps/zMapDH835LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH836/DH836.results.withFS/seed_connectivity_maps/zMapDH836LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH837/DH837.results.withFS/seed_connectivity_maps/zMapDH837LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH839/DH839.results.withFS/seed_connectivity_maps/zMapDH839LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH841/DH841.results.withFS/seed_connectivity_maps/zMapDH841LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH844/DH844.results.withFS/seed_connectivity_maps/zMapDH844LR_NAcc+tlrc'[0]' \
/data1/YAIROD/resting_state/subjects/DH846/DH846.results.withFS/seed_connectivity_maps/zMapDH846LR_NAcc+tlrc'[0]'
Covariates' file:
subj BDI CERQnonAdaptER CERQrum
zMapDH803LR_NAcc 4 11 15
zMapDH804LR_NAcc 1 6.5 9
zMapDH807LR_NAcc 2 7 11
zMapDH808LR_NAcc 6 6.75 14
zMapDH809LR_NAcc 9 11.5 15
zMapDH810LR_NAcc 0 5 4
zMapDH811LR_NAcc 7 7.5 9
zMapDH813LR_NAcc 1 6.25 8
zMapDH814LR_NAcc 1 10.75 14
zMapDH815LR_NAcc 19 11 15
zMapDH819LR_NAcc 2 10.25 12
zMapDH823LR_NAcc 1 9 11
zMapDH828LR_NAcc 7 8.25 8
zMapDH833LR_NAcc 5 5.5 8
zMapDH834LR_NAcc 5 11 17
zMapDH835LR_NAcc 5 10 13
zMapDH836LR_NAcc 4 7 7
zMapDH837LR_NAcc 16 6.75 10
zMapDH839LR_NAcc 7 9 18
zMapDH841LR_NAcc 1 6.25 10
zMapDH844LR_NAcc 1 8.75 10
zMapDH846LR_NAcc 1 10.5 14
So far I tried to change the label of the subj variable without any success.
Many thanks a lot for your kind attention and help !
Claudie
Claudie
| Subject | Author | Posted |
|---|---|---|
|
Claudie Gaillard | July 06, 2018 09:25AM |
|
rick reynolds | July 06, 2018 03:55PM |
|
Claudie Gaillard | July 17, 2018 04:43AM |
