AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
December 06, 2016 12:33AM
Hi-

The auto_warp.py function is a wrapper for 3dQwarp, but it does a bit of pre-processing on the input volume before aligning it using 3dSkullstrip and 3dUnifize. So, in that sense, it might be preferable to use auto_warp.py to start with (I find it's often helpful to 'polish' up images for helping alignment, so single spikes in values in CSF or edges don't ruin everything). In the history of your output from auto_warp.py, you will see the full set of 3d* commands, including 3dQwarp.

--pt
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Subject Author Posted

nonlinear tlrc

CD-Dan December 05, 2016 09:51PM

Re: nonlinear tlrc

ptaylor December 06, 2016 12:33AM

Re: nonlinear tlrc

Daniel Glen December 12, 2016 04:29PM

Re: nonlinear tlrc

Bob Cox December 13, 2016 08:32AM