AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Juan
December 05, 2016 10:47PM
Hi, List Experts,

Could you advise how I can use to3d to convert DICOM to nii format? I attempted to use the command.

to3d -prefix EPI_Sub1 -time: zt nz nt TR alt+z Input_DIC

I am NOT clear how to know whether my slices are in the order "z-axis first, then t-axis" or the contrary "t-axis first, then z-axis". Also, how to decide whether I should use alt+z, or alt+z2....? I read the help but am still unclear. Could I directly write the code adding two new arguments?

to3d -prefix EPI_Sub1 -time: zt nz nt TR alt+z - assume_dicom_mosaic -save_outliers outlier_fname Input_DIC

Thanks a lot,
Juan
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Subject Author Posted

to3d usage question

Juan December 05, 2016 10:47PM

Re: to3d usage question

Juan December 05, 2016 10:59PM

Re: to3d usage question

Juan December 05, 2016 11:08PM

Re: to3d usage question

rick reynolds December 06, 2016 08:03AM

Re: to3d usage question

Juan December 06, 2016 02:00PM

Re: to3d usage question

Juan December 06, 2016 04:01PM

Re: to3d usage question

rick reynolds December 07, 2016 12:36PM