Hi, Rick,

I have searched some old posts from you and other list users. I get to know that Dimon would extract the relevant information from the DICOM file and provide it to the to3d for the process. Given some issues, I tried to include two options (i.e., - assume_dicom_mosaic, -skip_outliers) to the Dimon command, but it does not work. To get clear what the exact process is, could you offer me some instruction on those issues? For instance, if we use the command below.

to3d -prefix EPI_Sub1 -time: zt nz nt TR alt+z - assume_dicom_mosaic -skip_outliers -save_outliers outlier_fname Input_document_dicom

How to know whether my slices are in the order "z-axis first, then t-axis" or the contrary "t-axis first, then z-axis". Also, how to decide whether I should use alt+z, or alt+z2 (I know the difference between them)? I ask you these questions as I myself can not find the information from the dicom file headers. I am also not clear how Dimon could get them and then provide it to to3d function - I tracked the output from the Dimon process, but could not find it. It seems that no one has made it clear.

Thank you very much for your time,
J



Edited 3 time(s). Last edit at 12/06/2016 04:30PM by Juan.