AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 08, 2016 07:55PM
Hello,

I am having a problem running @SUMA_AlignToExperiment - this worked for me yesterday. When I run @SUMA_AlignToExperiment, I get the following error:

set: Variable name must contain alphanumeric characters.


I have @SUMA_AlignToExperiment written into the script generated by afni_proc.py. Even when I try @SUMA_AlignToExperiment by itself outside of the script, I get the same error. I even tried updating my AFNI binaries. I tried to rerun @SUMA_AlignToExperiment on the dataset that I ran yesterday, and the same error occurred.

# ======================= surf (map data to surface) =======================
# map EPI data to the surface domain

# set directory variables
set surface_dir = /Users/sxa308/Box Sync/101/repreprocess_w_surf

# align the surface anatomy with the current experiment anatomy
@SUMA_AlignToExperiment -exp_anat anat_final.$subj+orig \
-surf_anat $surface_dir/101_SurfVol+orig \
-wd -strip_skull surf_anat \
-atlas_followers -overwrite_resp S \
-prefix ${subj}_SurfVol_Alnd_Exp
Subject Author Posted

@SUMA_AlignToExperiment Bug?

shanaadise December 08, 2016 07:55PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds December 09, 2016 02:53PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 03, 2022 03:56PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:08PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:45PM

Re: @SUMA_AlignToExperiment Bug? Attachments

philippn May 10, 2022 05:31PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor May 10, 2022 05:45PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 10, 2022 06:54PM

Re: @SUMA_AlignToExperiment Bug?

philippn June 02, 2022 12:37PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 12:45PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 07:07PM