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December 09, 2016 02:53PM
I am not sure what might be happening there,
since this works for me. What version of AFNI
are you running (afni -ver)?

And where is this script located
(which @SUMA_AlignToExperiment)?

Would you please run it via 'tcsh -x' and send
me the text output via email? So consider:

# (assuming $subj and $surface_dir are set)
mkdir rickr.test
cp anat_final.$subj+orig*  rickr.test
cd rickr.test

tcsh -x `which @SUMA_AlignToExperiment` \
   -exp_anat anat_final.$subj+orig \
   -surf_anat $surface_dir/101_SurfVol+orig \
   -wd -strip_skull surf_anat \
   -atlas_followers -overwrite_resp S \
   -prefix ${subj}_SurfVol_Alnd_Exp \
   |& tee out.a2e.txt

And then send me the out.a2e.txt file via email.

Thanks,

- rick
Subject Author Posted

@SUMA_AlignToExperiment Bug?

shanaadise December 08, 2016 07:55PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds December 09, 2016 02:53PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 03, 2022 03:56PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:08PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:45PM

Re: @SUMA_AlignToExperiment Bug? Attachments

philippn May 10, 2022 05:31PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor May 10, 2022 05:45PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 10, 2022 06:54PM

Re: @SUMA_AlignToExperiment Bug?

philippn June 02, 2022 12:37PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 12:45PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 07:07PM



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